Hb_002107_060

Information

Type -
Description -
Location Contig2107: 39897-42139
Sequence    

Annotation

kegg
ID rcu:RCOM_1598640
description hypothetical protein
nr
ID XP_012073759.1
description PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NTZ5
description JHL20J20.12 protein OS=Jatropha curcas GN=JHL20J20.12 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21798: 40535-40893 , PASA_asmbl_21799: 41245-42062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_060 0.0 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
2 Hb_002897_050 0.0789384964 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
3 Hb_011631_010 0.0818893712 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
4 Hb_000084_240 0.0919627181 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
5 Hb_000045_260 0.0995726078 - - protein with unknown function [Ricinus communis]
6 Hb_000638_280 0.1020460323 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_000375_290 0.1029910608 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_004236_030 0.104144692 - - unknown [Lotus japonicus]
9 Hb_003777_110 0.1054132032 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
10 Hb_005499_010 0.107407674 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_000454_140 0.1078580658 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
12 Hb_000866_210 0.1116723787 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
13 Hb_000925_030 0.1124238564 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_003992_180 0.1133044268 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
15 Hb_006132_040 0.1133170658 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
16 Hb_009486_160 0.1156713099 - - PREDICTED: metacaspase-1 [Jatropha curcas]
17 Hb_004526_010 0.1158665302 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
18 Hb_000699_210 0.1175764411 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
19 Hb_000796_120 0.1180531616 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
20 Hb_001245_050 0.1213709644 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]

Gene co-expression network

sample Hb_002107_060 Hb_002107_060 Hb_002897_050 Hb_002897_050 Hb_002107_060--Hb_002897_050 Hb_011631_010 Hb_011631_010 Hb_002107_060--Hb_011631_010 Hb_000084_240 Hb_000084_240 Hb_002107_060--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002107_060--Hb_000045_260 Hb_000638_280 Hb_000638_280 Hb_002107_060--Hb_000638_280 Hb_000375_290 Hb_000375_290 Hb_002107_060--Hb_000375_290 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_011631_010 Hb_002897_050--Hb_000638_280 Hb_002897_050--Hb_000084_240 Hb_002897_050--Hb_000045_260 Hb_011631_010--Hb_000045_260 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_011631_010--Hb_000638_280 Hb_011631_010--Hb_000084_240 Hb_000084_240--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_000084_240--Hb_000186_200 Hb_000084_240--Hb_000045_260 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.086 47.1964 30.1703 9.91033 9.56173 8.46449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.68169 12.1502 5.46291 10.2878 9.79063

CAGE analysis