Hb_000579_190

Information

Type -
Description -
Location Contig579: 195998-199878
Sequence    

Annotation

kegg
ID rcu:RCOM_1595540
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012071921.1
description PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
swissprot
ID Q40517
description Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1
trembl
ID A0A067KQQ4
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_04476 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog ntf3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49785: 196043-199831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_190 0.0 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
2 Hb_001005_020 0.0729908645 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
3 Hb_000375_290 0.0786258759 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_001558_060 0.0848626888 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
5 Hb_004236_030 0.0856427324 - - unknown [Lotus japonicus]
6 Hb_004943_030 0.0860166347 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
7 Hb_008695_090 0.0944525416 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
8 Hb_003605_050 0.0985227876 - - protein with unknown function [Ricinus communis]
9 Hb_002311_480 0.1039549413 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
10 Hb_000048_080 0.1060042227 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
11 Hb_002483_010 0.1100456182 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
12 Hb_000979_060 0.1101543503 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
13 Hb_000291_030 0.1104516147 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
14 Hb_000139_190 0.1111377804 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
15 Hb_000723_110 0.1114832395 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
16 Hb_000169_080 0.1125105132 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
17 Hb_009449_060 0.1132770267 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
18 Hb_001245_050 0.1142840075 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
19 Hb_000086_430 0.1143718696 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
20 Hb_023226_070 0.1151671291 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000579_190 Hb_000579_190 Hb_001005_020 Hb_001005_020 Hb_000579_190--Hb_001005_020 Hb_000375_290 Hb_000375_290 Hb_000579_190--Hb_000375_290 Hb_001558_060 Hb_001558_060 Hb_000579_190--Hb_001558_060 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_007290_030 Hb_007290_030 Hb_001005_020--Hb_007290_030 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_000375_290--Hb_001558_060 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_008165_030 Hb_008165_030 Hb_001558_060--Hb_008165_030 Hb_003992_180 Hb_003992_180 Hb_001558_060--Hb_003992_180 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_006132_040 Hb_006132_040 Hb_004236_030--Hb_006132_040 Hb_004236_030--Hb_001558_060 Hb_000890_010 Hb_000890_010 Hb_004236_030--Hb_000890_010 Hb_004236_030--Hb_000375_290 Hb_002107_060 Hb_002107_060 Hb_004236_030--Hb_002107_060 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_004943_030--Hb_023226_070 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9401 60.4994 82.0514 20.9579 23.4054 30.8576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4437 24.1578 22.7884 23.164 18.7103

CAGE analysis