Hb_004943_030

Information

Type -
Description -
Location Contig4943: 57839-73055
Sequence    

Annotation

kegg
ID rcu:RCOM_1092960
description cation:chloride symporter, putative
nr
ID XP_012075650.1
description PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
swissprot
ID Q2UVJ5
description Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1
trembl
ID A0A067KSY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09247 PE=4 SV=1
Gene Ontology
ID GO:0005768
description cation-chloride cotransporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004943_030 0.0 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
2 Hb_060094_020 0.0758049722 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
3 Hb_003605_050 0.0769495065 - - protein with unknown function [Ricinus communis]
4 Hb_008695_090 0.0770281019 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
5 Hb_001754_030 0.0772756631 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
6 Hb_000227_270 0.0773104243 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
7 Hb_023226_070 0.0828162458 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000169_080 0.0850905218 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
9 Hb_000375_290 0.0851932027 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000579_190 0.0860166347 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
11 Hb_001005_020 0.0879936634 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
12 Hb_000048_080 0.0883648063 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
13 Hb_001366_090 0.0917159545 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
14 Hb_001300_010 0.0926399926 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000086_500 0.0947026611 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_000866_450 0.094818599 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_001558_060 0.0954354194 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
18 Hb_000352_350 0.0956812932 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
19 Hb_003894_120 0.0959027534 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
20 Hb_001761_120 0.0966208518 - - hypothetical protein JCGZ_22564 [Jatropha curcas]

Gene co-expression network

sample Hb_004943_030 Hb_004943_030 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_008695_090 Hb_008695_090 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_004943_030--Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_003605_050--Hb_000227_270 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140 Hb_000375_290 Hb_000375_290 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_001754_030--Hb_023226_070 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_001754_030--Hb_000723_110 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_000227_270--Hb_023226_070 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09761 5.30815 5.64112 3.07244 1.80548 2.85167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.753 1.97361 2.60521 2.25902 2.02362

CAGE analysis