Hb_003605_050

Information

Type -
Description -
Location Contig3605: 43405-48451
Sequence    

Annotation

kegg
ID rcu:RCOM_0186330
description protein with unknown function
nr
ID XP_002534491.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID B9T8C2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0186330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37129: 43450-48231 , PASA_asmbl_37130: 43463-48451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004943_030 0.0769495065 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
3 Hb_000227_270 0.0838263804 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
4 Hb_023226_070 0.0858070144 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000115_340 0.0859560954 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_008165_030 0.088379153 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
7 Hb_002903_140 0.0922399305 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
8 Hb_000866_450 0.0945355272 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_000977_300 0.0957298044 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
10 Hb_143766_110 0.0973278923 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
11 Hb_000723_110 0.0977510001 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
12 Hb_030545_030 0.0984776684 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
13 Hb_000579_190 0.0985227876 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
14 Hb_001005_020 0.0987561691 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
15 Hb_000048_080 0.0989041333 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
16 Hb_009449_060 0.0991549401 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_008695_090 0.0994847791 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
18 Hb_001558_060 0.0998751718 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
19 Hb_000264_070 0.1005495767 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_007017_070 0.1005571393 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_050 Hb_003605_050 Hb_004943_030 Hb_004943_030 Hb_003605_050--Hb_004943_030 Hb_000227_270 Hb_000227_270 Hb_003605_050--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_008695_090 Hb_008695_090 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_004943_030--Hb_000227_270 Hb_004943_030--Hb_023226_070 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_000227_270--Hb_023226_070 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_001245_050 Hb_001245_050 Hb_000115_340--Hb_001245_050 Hb_000866_450 Hb_000866_450 Hb_000115_340--Hb_000866_450 Hb_003181_040 Hb_003181_040 Hb_000115_340--Hb_003181_040 Hb_000115_340--Hb_023226_070 Hb_001699_010 Hb_001699_010 Hb_000115_340--Hb_001699_010 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_002903_140--Hb_030545_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_002903_140--Hb_096819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.4868 125.126 144.939 68.9764 60.2247 67.1939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9955 25.1696 50.7105 47.5341 45.1159

CAGE analysis