Hb_001245_050

Information

Type -
Description -
Location Contig1245: 94750-99209
Sequence    

Annotation

kegg
ID rcu:RCOM_1405850
description hypothetical protein
nr
ID XP_012071571.1
description PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3U4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04077 PE=4 SV=1
Gene Ontology
ID GO:0004386
description atp-dependent dna helicase pcra

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07414: 94776-99201 , PASA_asmbl_07415: 94776-99201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001245_050 0.0 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
2 Hb_003777_110 0.0669679979 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
3 Hb_006452_180 0.0733519466 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_000866_450 0.07484225 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_000115_340 0.0748939762 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_000375_290 0.0795996234 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000120_030 0.088697517 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
8 Hb_008695_090 0.0896744753 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
9 Hb_010287_020 0.0898995287 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_004526_010 0.0926385592 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
11 Hb_000048_080 0.0928924727 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
12 Hb_007017_070 0.0943535364 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
13 Hb_023226_070 0.0956671068 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001009_120 0.0964238683 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
15 Hb_003682_030 0.0964685657 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
16 Hb_006502_020 0.09771103 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
17 Hb_000094_090 0.0977220255 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
18 Hb_004943_030 0.0984037581 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
19 Hb_000723_110 0.1018292967 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
20 Hb_033152_090 0.102018652 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_001245_050 Hb_001245_050 Hb_003777_110 Hb_003777_110 Hb_001245_050--Hb_003777_110 Hb_006452_180 Hb_006452_180 Hb_001245_050--Hb_006452_180 Hb_000866_450 Hb_000866_450 Hb_001245_050--Hb_000866_450 Hb_000115_340 Hb_000115_340 Hb_001245_050--Hb_000115_340 Hb_000375_290 Hb_000375_290 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_003777_110--Hb_000375_290 Hb_001009_120 Hb_001009_120 Hb_003777_110--Hb_001009_120 Hb_011631_010 Hb_011631_010 Hb_003777_110--Hb_011631_010 Hb_003777_110--Hb_006452_180 Hb_010287_020 Hb_010287_020 Hb_003777_110--Hb_010287_020 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_000809_160 Hb_000809_160 Hb_000866_450--Hb_000809_160 Hb_005288_140 Hb_005288_140 Hb_000866_450--Hb_005288_140 Hb_000094_090 Hb_000094_090 Hb_000866_450--Hb_000094_090 Hb_102438_030 Hb_102438_030 Hb_000866_450--Hb_102438_030 Hb_000723_110 Hb_000723_110 Hb_000866_450--Hb_000723_110 Hb_003605_050 Hb_003605_050 Hb_000115_340--Hb_003605_050 Hb_000115_340--Hb_000866_450 Hb_003181_040 Hb_003181_040 Hb_000115_340--Hb_003181_040 Hb_023226_070 Hb_023226_070 Hb_000115_340--Hb_023226_070 Hb_001699_010 Hb_001699_010 Hb_000115_340--Hb_001699_010 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_000375_290--Hb_023226_070 Hb_000120_030--Hb_001699_010 Hb_000120_030--Hb_010287_020 Hb_000327_140 Hb_000327_140 Hb_000120_030--Hb_000327_140 Hb_000086_420 Hb_000086_420 Hb_000120_030--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_000120_030--Hb_004994_240 Hb_000363_120 Hb_000363_120 Hb_000120_030--Hb_000363_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3292 37.5799 34.2274 18.6749 14.0749 14.0623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.41809 13.8632 10.3584 9.71116 11.3667

CAGE analysis