Hb_000120_030

Information

Type -
Description -
Location Contig120: 20954-27922
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05090g
description POPTRDRAFT_557923; hypothetical protein
nr
ID XP_012067579.1
description PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
swissprot
ID O64843
description Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1
trembl
ID A0A067LDC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08468 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06043: 21130-27914 , PASA_asmbl_06045: 27131-27356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_030 0.0 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
2 Hb_001699_010 0.0693353014 - - drought-inducible protein [Manihot esculenta]
3 Hb_010287_020 0.0723076639 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_000327_140 0.0729701214 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
5 Hb_000086_420 0.073004602 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
6 Hb_004994_240 0.0739509418 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
7 Hb_000363_120 0.0793446346 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
8 Hb_001300_010 0.0806178182 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_002232_480 0.0828273061 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
10 Hb_006452_180 0.0863551524 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_000094_090 0.0865328413 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
12 Hb_004517_020 0.0886927172 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
13 Hb_001245_050 0.088697517 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
14 Hb_000445_060 0.088942279 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
15 Hb_000373_230 0.0890673832 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_060094_020 0.0891377011 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
17 Hb_031641_010 0.089141574 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000809_160 0.0893530766 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
19 Hb_000120_910 0.0917425986 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_002014_010 0.0919395756 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000120_030 Hb_000120_030 Hb_001699_010 Hb_001699_010 Hb_000120_030--Hb_001699_010 Hb_010287_020 Hb_010287_020 Hb_000120_030--Hb_010287_020 Hb_000327_140 Hb_000327_140 Hb_000120_030--Hb_000327_140 Hb_000086_420 Hb_000086_420 Hb_000120_030--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_000120_030--Hb_004994_240 Hb_000363_120 Hb_000363_120 Hb_000120_030--Hb_000363_120 Hb_000089_210 Hb_000089_210 Hb_001699_010--Hb_000089_210 Hb_001699_010--Hb_010287_020 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_000327_140--Hb_000086_420 Hb_000029_060 Hb_000029_060 Hb_000327_140--Hb_000029_060 Hb_012239_020 Hb_012239_020 Hb_000327_140--Hb_012239_020 Hb_000327_140--Hb_004994_240 Hb_002232_480 Hb_002232_480 Hb_000327_140--Hb_002232_480 Hb_000086_420--Hb_000029_060 Hb_000086_420--Hb_012239_020 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_001300_010 Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1648 37.099 30.8313 24.3049 16.4412 16.9952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66806 18.8129 15.7572 17.2257 17.9752

CAGE analysis