Hb_000738_020

Information

Type -
Description -
Location Contig738: 45931-47834
Sequence    

Annotation

kegg
ID rcu:RCOM_1402410
description zinc finger protein, putative
nr
ID XP_002516344.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FHW2
description SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1
trembl
ID B9RRH5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1402410 PE=4 SV=1
Gene Ontology
ID GO:0005634
description swr1 complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56227: 46089-47918 , PASA_asmbl_56228: 46089-47866
cDNA
(Sanger)
(ID:Location)		 020_L10.ab1: 46172-47909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000738_020 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_062226_130 0.0399179371 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
3 Hb_012239_020 0.0556124831 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
4 Hb_002073_200 0.0635943796 - - Phosphatase 2A-2 [Theobroma cacao]
5 Hb_005162_090 0.0636561922 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
6 Hb_003849_110 0.0642415586 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
7 Hb_000869_080 0.0659912331 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
8 Hb_000029_060 0.0669422015 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
9 Hb_164010_040 0.0673524849 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000484_130 0.0687879471 - - splicing factor, putative [Ricinus communis]
11 Hb_002820_030 0.0692309855 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
12 Hb_001221_110 0.0712290178 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
13 Hb_000086_420 0.0727473011 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_000522_150 0.0729427066 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
15 Hb_001359_050 0.0745017431 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000365_230 0.0771759611 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
17 Hb_000292_100 0.0779007442 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
18 Hb_013358_040 0.078592199 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
19 Hb_164390_010 0.078680017 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
20 Hb_004994_240 0.078730156 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]

Gene co-expression network

sample Hb_000738_020 Hb_000738_020 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_012239_020 Hb_012239_020 Hb_000738_020--Hb_012239_020 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_003849_110 Hb_003849_110 Hb_000738_020--Hb_003849_110 Hb_000869_080 Hb_000869_080 Hb_000738_020--Hb_000869_080 Hb_062226_130--Hb_005162_090 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_000869_080--Hb_164010_040 Hb_000869_080--Hb_013358_040 Hb_000869_080--Hb_002073_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.693 20.3408 18.6005 16.9508 9.08512 10.3313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8167 18.9838 12.1797 11.3789 11.9917

CAGE analysis