Hb_002818_030

Information

Type -
Description -
Location Contig2818: 51664-56885
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18820g
description POPTRDRAFT_552616; transport family protein
nr
ID XP_012083009.1
description PREDICTED: protein transport protein SEC23 [Jatropha curcas]
swissprot
ID Q6BQT6
description Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1
trembl
ID A0A067JWT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14113 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein transport protein sec23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29487: 51789-56851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_030 0.0 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
2 Hb_004916_010 0.0412475588 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
3 Hb_019863_070 0.0484256278 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
4 Hb_003849_110 0.0561195681 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_000049_260 0.0588805508 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_002798_070 0.0594178228 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
7 Hb_000069_310 0.0616842676 - - ubiquitin ligase [Cucumis melo subsp. melo]
8 Hb_003494_020 0.0625674351 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
9 Hb_000868_090 0.0634324252 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
10 Hb_003464_090 0.0652825779 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
11 Hb_000029_060 0.0681160544 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
12 Hb_015807_150 0.0682668526 - - actin binding protein, putative [Ricinus communis]
13 Hb_000258_160 0.0686931746 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002234_090 0.0692219912 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
15 Hb_033772_030 0.0696462329 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
16 Hb_022256_020 0.0698450804 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
17 Hb_001195_530 0.0698527605 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003906_200 0.0700363934 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
19 Hb_007163_120 0.0709312258 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
20 Hb_000172_430 0.0729197857 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002818_030 Hb_002818_030 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_003849_110 Hb_003849_110 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_003849_110--Hb_000029_060 Hb_020831_030 Hb_020831_030 Hb_000049_260--Hb_020831_030 Hb_002234_170 Hb_002234_170 Hb_000049_260--Hb_002234_170 Hb_001195_530 Hb_001195_530 Hb_000049_260--Hb_001195_530 Hb_000049_260--Hb_002798_070 Hb_013399_100 Hb_013399_100 Hb_000049_260--Hb_013399_100 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002783_040 Hb_002783_040 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_013358_040 Hb_013358_040 Hb_000069_310--Hb_013358_040 Hb_000069_310--Hb_003849_110 Hb_000915_180 Hb_000915_180 Hb_000069_310--Hb_000915_180 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.94221 21.4398 10.5602 13.0319 10.8172 11.6955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8476 14.4011 16.3853 11.6056 12.8661

CAGE analysis