Hb_001473_160

Information

Type -
Description -
Location Contig1473: 147183-151122
Sequence    

Annotation

kegg
ID rcu:RCOM_1020430
description Vesicle-associated membrane protein, putative
nr
ID XP_002518125.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9MAS5
description Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2
trembl
ID B9RWK6
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1020430 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 726

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11993: 147335-150994 , PASA_asmbl_11994: 147139-151077 , PASA_asmbl_11995: 147193-151019
cDNA
(Sanger)
(ID:Location)		 008_L06.ab1: 147335-150672 , 042_B13.ab1: 147335-150256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_160 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_000072_120 0.0458933229 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000329_230 0.0564048742 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
4 Hb_000637_110 0.0567815871 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
5 Hb_002028_210 0.0592202304 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
6 Hb_003906_200 0.0615141876 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
7 Hb_093458_040 0.0617800254 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_000069_310 0.0641907102 - - ubiquitin ligase [Cucumis melo subsp. melo]
9 Hb_000349_260 0.0651374967 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
10 Hb_004990_010 0.0658153434 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
11 Hb_000088_170 0.0668867389 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
12 Hb_000300_500 0.0706304564 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
13 Hb_005137_040 0.0708592893 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
14 Hb_002754_010 0.0720496402 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
15 Hb_001679_050 0.0721176609 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
16 Hb_168978_010 0.0730261445 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
17 Hb_001195_530 0.0733436977 - - conserved hypothetical protein [Ricinus communis]
18 Hb_024621_040 0.0749875643 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
19 Hb_002492_010 0.0750388053 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
20 Hb_006455_120 0.0756943513 - - n6-DNA-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001473_160 Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000072_120--Hb_000329_230 Hb_000072_120--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_004030_080 Hb_004030_080 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050 Hb_003617_020 Hb_003617_020 Hb_000329_230--Hb_003617_020 Hb_000390_250 Hb_000390_250 Hb_000329_230--Hb_000390_250 Hb_000329_230--Hb_003906_200 Hb_000329_230--Hb_001674_030 Hb_000349_260 Hb_000349_260 Hb_000637_110--Hb_000349_260 Hb_005137_040 Hb_005137_040 Hb_000637_110--Hb_005137_040 Hb_000088_170 Hb_000088_170 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_002028_210--Hb_093458_040 Hb_001408_040 Hb_001408_040 Hb_002028_210--Hb_001408_040 Hb_005653_090 Hb_005653_090 Hb_002028_210--Hb_005653_090 Hb_002492_010 Hb_002492_010 Hb_002028_210--Hb_002492_010 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.2222 99.3531 81.9216 123.253 62.5432 83.0002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.9009 83.6722 100.636 76.3971 61.8678

CAGE analysis