Hb_005137_040

Information

Type -
Description -
Location Contig5137: 64475-70486
Sequence    

Annotation

kegg
ID rcu:RCOM_0603120
description hypothetical protein
nr
ID KDP31863.1
description hypothetical protein JCGZ_12324 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12324 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46401: 65115-66253 , PASA_asmbl_46402: 66883-68000 , PASA_asmbl_46403: 68095-68960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005137_040 0.0 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
2 Hb_005918_010 0.0463715185 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
3 Hb_000637_110 0.0542359178 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
4 Hb_012506_030 0.0553061247 - - AP-2 complex subunit alpha, putative [Ricinus communis]
5 Hb_105105_010 0.060437439 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
6 Hb_000088_170 0.0649311258 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
7 Hb_000441_220 0.0675131513 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001473_160 0.0708592893 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_000856_040 0.07129849 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
10 Hb_001408_140 0.0728521185 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
11 Hb_001195_530 0.0733067689 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003544_060 0.0737617527 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
13 Hb_000072_120 0.0738519691 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_003058_260 0.0748108776 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_013399_020 0.0750453701 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
16 Hb_002056_090 0.07618752 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
17 Hb_001221_080 0.0793772343 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_000349_260 0.0794683048 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_002492_010 0.0796600811 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
20 Hb_002205_250 0.0826362139 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005137_040 Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_005918_010--Hb_105105_010 Hb_005918_010--Hb_000441_220 Hb_000349_260 Hb_000349_260 Hb_000637_110--Hb_000349_260 Hb_001473_160 Hb_001473_160 Hb_000637_110--Hb_001473_160 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_012506_030--Hb_000441_220 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_002205_250 Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_000088_170--Hb_000349_260 Hb_000088_170--Hb_001473_160 Hb_000856_040 Hb_000856_040 Hb_000088_170--Hb_000856_040 Hb_000088_170--Hb_001408_140 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95777 2.84391 3.13971 3.06308 2.07768 2.44876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90308 1.65184 3.08365 2.69323 1.73518

CAGE analysis