Hb_001195_530

Information

Type -
Description -
Location Contig1195: 329470-337735
Sequence    

Annotation

kegg
ID rcu:RCOM_1593820
description hypothetical protein
nr
ID XP_002510353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUK9
description Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2
trembl
ID B9R7R0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593820 PE=4 SV=1
Gene Ontology
ID GO:0016740
description udp-d-xylose:l-fucose alpha- -d-xylosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05845: 329653-333737 , PASA_asmbl_05847: 335511-337970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_530 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020831_030 0.0304136894 - - conserved hypothetical protein [Ricinus communis]
3 Hb_105105_010 0.0487631476 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
4 Hb_003640_040 0.0504325446 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
5 Hb_001408_140 0.0523895057 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
6 Hb_002056_090 0.0566061732 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
7 Hb_002205_250 0.0566639281 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
8 Hb_002217_170 0.0586727234 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
9 Hb_000915_180 0.0602068579 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
10 Hb_003464_090 0.0609402718 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
11 Hb_000614_210 0.0613852722 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
12 Hb_001716_020 0.0615161519 - - hydrolase, putative [Ricinus communis]
13 Hb_001089_050 0.0640673234 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
14 Hb_000866_460 0.064245255 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
15 Hb_000861_080 0.0642827354 - - PREDICTED: protein ELC-like [Jatropha curcas]
16 Hb_000087_060 0.064291906 - - protein transporter, putative [Ricinus communis]
17 Hb_004553_030 0.0646287085 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
18 Hb_000049_260 0.0648371873 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000069_310 0.0654522858 - - ubiquitin ligase [Cucumis melo subsp. melo]
20 Hb_162275_050 0.0656542903 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_001195_530 Hb_001195_530 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_020831_030--Hb_003640_040 Hb_020831_030--Hb_002056_090 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_004195_200 Hb_004195_200 Hb_020831_030--Hb_004195_200 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100 Hb_105105_010--Hb_002205_250 Hb_105105_010--Hb_001408_140 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_003640_040--Hb_002056_090 Hb_003640_040--Hb_004195_200 Hb_000680_090 Hb_000680_090 Hb_003640_040--Hb_000680_090 Hb_000070_080 Hb_000070_080 Hb_003640_040--Hb_000070_080 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_002056_090--Hb_105105_010 Hb_000087_060 Hb_000087_060 Hb_002056_090--Hb_000087_060 Hb_005137_040 Hb_005137_040 Hb_002056_090--Hb_005137_040 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2799 35.7436 26.6158 26.9577 27.1064 25.9184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2672 22.6959 27.9405 22.1595 20.2096

CAGE analysis