Hb_013399_100

Information

Type -
Description -
Location Contig13399: 81779-90738
Sequence    

Annotation

kegg
ID rcu:RCOM_0654100
description hypothetical protein
nr
ID XP_002521351.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L793
description Polyadenylate-binding protein-interacting protein 3 OS=Arabidopsis thaliana GN=CID3 PE=2 SV=1
trembl
ID B9S5T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0654100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09575: 81109-90716 , PASA_asmbl_09578: 85384-85663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001409_020 0.0438492281 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
3 Hb_000060_090 0.052488083 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
4 Hb_105105_020 0.0567401217 - - vacuolar protein sorting vps41, putative [Ricinus communis]
5 Hb_003504_030 0.0568209541 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
6 Hb_000780_230 0.0579670263 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
7 Hb_010618_010 0.0597860169 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_001248_060 0.0598644161 - - conserved hypothetical protein [Ricinus communis]
9 Hb_020831_030 0.0613661311 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015934_040 0.0620236941 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
11 Hb_011995_010 0.0629818969 - - dc50, putative [Ricinus communis]
12 Hb_000331_670 0.0632439708 - - PREDICTED: protein tipD [Jatropha curcas]
13 Hb_007416_180 0.0640072948 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_002843_120 0.0664951039 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
15 Hb_000603_280 0.0667154193 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_000915_180 0.0674253298 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
17 Hb_000049_260 0.0681632262 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_001818_070 0.0694387588 - - carbon catabolite repressor protein, putative [Ricinus communis]
19 Hb_000563_320 0.0703910032 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
20 Hb_007163_120 0.0705416036 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_013399_100 Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_000060_090--Hb_105105_020 Hb_008643_210 Hb_008643_210 Hb_000060_090--Hb_008643_210 Hb_010222_050 Hb_010222_050 Hb_000060_090--Hb_010222_050 Hb_009548_020 Hb_009548_020 Hb_105105_020--Hb_009548_020 Hb_015934_040 Hb_015934_040 Hb_105105_020--Hb_015934_040 Hb_016172_020 Hb_016172_020 Hb_105105_020--Hb_016172_020 Hb_105105_020--Hb_010618_010 Hb_000327_270 Hb_000327_270 Hb_003504_030--Hb_000327_270 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_003504_030--Hb_001409_020 Hb_000152_380 Hb_000152_380 Hb_000780_230--Hb_000152_380 Hb_000796_030 Hb_000796_030 Hb_000780_230--Hb_000796_030 Hb_002025_020 Hb_002025_020 Hb_000780_230--Hb_002025_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120 Hb_010618_010--Hb_001248_060 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1621 40.2295 26.2037 28.8747 34.4837 39.7686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3003 29.561 41.1495 22.0234 24.478

CAGE analysis