Hb_000225_040

Information

Type -
Description -
Location Contig225: 139838-147567
Sequence    

Annotation

kegg
ID pda:103709768
description translation factor GUF1 homolog, mitochondrial
nr
ID XP_010242384.1
description PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
swissprot
ID B9RUN8
description Translation factor GUF1 homolog, mitochondrial OS=Ricinus communis GN=RCOM_0855130 PE=3 SV=1
trembl
ID A0A0E0PTG1
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0003924
description translation factor guf1 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23417: 139854-147549 , PASA_asmbl_23418: 145014-145189 , PASA_asmbl_23419: 141363-144626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000225_040 0.0 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
2 Hb_000011_200 0.0374469142 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
3 Hb_003158_010 0.048756986 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
4 Hb_167498_010 0.0525613532 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
5 Hb_010618_010 0.0529317601 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_000193_190 0.054622536 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
7 Hb_000329_470 0.0558321864 - - ccr4-not transcription complex, putative [Ricinus communis]
8 Hb_123352_020 0.0572581099 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
9 Hb_003525_010 0.057637674 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
10 Hb_007575_050 0.0577514736 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
11 Hb_004410_030 0.0578169495 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001341_170 0.0587477864 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
13 Hb_000123_210 0.0614474666 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
14 Hb_044728_010 0.0616551599 - - -
15 Hb_009545_100 0.0624839617 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
16 Hb_002025_020 0.0629433415 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
17 Hb_000085_160 0.06366321 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
18 Hb_017862_020 0.0642129672 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
19 Hb_003025_110 0.0643686816 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
20 Hb_001409_020 0.0647560018 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]

Gene co-expression network

sample Hb_000225_040 Hb_000225_040 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_167498_010 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_001369_730 Hb_001369_730 Hb_167498_010--Hb_001369_730 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000329_470 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_000205_100 Hb_000205_100 Hb_000193_190--Hb_000205_100 Hb_001946_010 Hb_001946_010 Hb_000193_190--Hb_001946_010 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_011930_160 Hb_011930_160 Hb_000193_190--Hb_011930_160 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.98697 8.26151 4.95181 6.77077 10.6953 12.123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.01212 9.67417 9.36375 10.6035 6.84032

CAGE analysis