Hb_003226_180

Information

Type -
Description -
Location Contig3226: 135517-142042
Sequence    

Annotation

kegg
ID rcu:RCOM_1178390
description U3 small nucleolar RNA-associated protein, putative
nr
ID XP_012082788.1
description PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
swissprot
ID Q04500
description U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP14 PE=1 SV=1
trembl
ID A0A067JZF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13944 PE=4 SV=1
Gene Ontology
ID GO:0032040
description u3 small nucleolar rna-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34174: 135525-137536 , PASA_asmbl_34175: 138985-140931 , PASA_asmbl_34176: 138947-141927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_180 0.0 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
2 Hb_000329_470 0.0478522762 - - ccr4-not transcription complex, putative [Ricinus communis]
3 Hb_003158_010 0.063287991 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
4 Hb_003106_060 0.065318608 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
5 Hb_003376_400 0.0714409526 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
6 Hb_000373_280 0.0728852443 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
7 Hb_006913_030 0.0738852644 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
8 Hb_000225_040 0.0754345296 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
9 Hb_001579_220 0.0773336449 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_167498_010 0.0775180268 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_044728_010 0.0800357175 - - -
12 Hb_000011_200 0.0818595239 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
13 Hb_003878_070 0.082593334 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
14 Hb_166222_010 0.0830387154 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
15 Hb_004410_030 0.0831068634 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001369_730 0.0840305165 - - F5O11.10, putative isoform 1 [Theobroma cacao]
17 Hb_005496_130 0.0843622869 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_007575_050 0.0852398114 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
19 Hb_000028_480 0.0853583952 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
20 Hb_002107_030 0.085656736 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_180 Hb_003226_180 Hb_000329_470 Hb_000329_470 Hb_003226_180--Hb_000329_470 Hb_003158_010 Hb_003158_010 Hb_003226_180--Hb_003158_010 Hb_003106_060 Hb_003106_060 Hb_003226_180--Hb_003106_060 Hb_003376_400 Hb_003376_400 Hb_003226_180--Hb_003376_400 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_006913_030 Hb_006913_030 Hb_003226_180--Hb_006913_030 Hb_000329_470--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_003158_010--Hb_167498_010 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_000227_120 Hb_000227_120 Hb_003106_060--Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_003106_060--Hb_003142_020 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_003106_060--Hb_000329_470 Hb_000976_300 Hb_000976_300 Hb_003376_400--Hb_000976_300 Hb_166222_010 Hb_166222_010 Hb_003376_400--Hb_166222_010 Hb_004143_130 Hb_004143_130 Hb_003376_400--Hb_004143_130 Hb_000377_090 Hb_000377_090 Hb_003376_400--Hb_000377_090 Hb_001449_040 Hb_001449_040 Hb_003376_400--Hb_001449_040 Hb_018838_030 Hb_018838_030 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_001545_120 Hb_001545_120 Hb_000373_280--Hb_001545_120 Hb_000120_730 Hb_000120_730 Hb_000373_280--Hb_000120_730 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020 Hb_002107_030 Hb_002107_030 Hb_006913_030--Hb_002107_030 Hb_002499_040 Hb_002499_040 Hb_006913_030--Hb_002499_040 Hb_000365_120 Hb_000365_120 Hb_006913_030--Hb_000365_120 Hb_006913_030--Hb_003158_010 Hb_002942_190 Hb_002942_190 Hb_006913_030--Hb_002942_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8546 13.5222 7.00922 8.37876 18.9713 19.1513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3823 17.864 16.9243 19.5841 17.3094

CAGE analysis