Hb_000227_120

Information

Type -
Description -
Location Contig227: 106975-109522
Sequence    

Annotation

kegg
ID rcu:RCOM_0913550
description hypothetical protein
nr
ID XP_002517187.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID B9RTW8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913550 PE=3 SV=1
Gene Ontology
ID GO:0016021
description somatic embryogenesis receptor kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23597: 74969-108067 , PASA_asmbl_23600: 106846-108067 , PASA_asmbl_23603: 108120-109176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003142_020 0.0524868866 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
3 Hb_003106_060 0.0656832597 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
4 Hb_000684_470 0.0776838077 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
5 Hb_002660_010 0.0810428928 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
6 Hb_003291_010 0.0852002945 - - ATP-dependent protease La, putative [Ricinus communis]
7 Hb_009382_010 0.0853411382 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
8 Hb_007441_200 0.0885110942 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
9 Hb_003050_220 0.0886987638 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
10 Hb_005463_100 0.0907766116 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
11 Hb_009486_140 0.0929670755 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
12 Hb_005116_160 0.0933597162 transcription factor TF Family: TRAF -
13 Hb_002110_150 0.0946258019 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
14 Hb_001007_060 0.0946663807 - - Transcriptional corepressor SEUSS [Glycine soja]
15 Hb_009767_110 0.0953606842 - - -
16 Hb_000976_300 0.0961488501 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
17 Hb_002499_040 0.0969126383 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
18 Hb_002725_120 0.0969938024 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
19 Hb_003226_180 0.0970427328 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
20 Hb_002391_310 0.0975201755 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]

Gene co-expression network

sample Hb_000227_120 Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_000227_120--Hb_003142_020 Hb_003106_060 Hb_003106_060 Hb_000227_120--Hb_003106_060 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003142_020--Hb_003291_010 Hb_003142_020--Hb_003106_060 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_000684_470--Hb_009767_110 Hb_002006_030 Hb_002006_030 Hb_002660_010--Hb_002006_030 Hb_005348_140 Hb_005348_140 Hb_002660_010--Hb_005348_140 Hb_001318_270 Hb_001318_270 Hb_002660_010--Hb_001318_270 Hb_002391_310 Hb_002391_310 Hb_002660_010--Hb_002391_310 Hb_009486_140 Hb_009486_140 Hb_002660_010--Hb_009486_140 Hb_001486_180 Hb_001486_180 Hb_003291_010--Hb_001486_180 Hb_000977_110 Hb_000977_110 Hb_003291_010--Hb_000977_110 Hb_003291_010--Hb_001318_270 Hb_003688_150 Hb_003688_150 Hb_003291_010--Hb_003688_150 Hb_000603_110 Hb_000603_110 Hb_009382_010--Hb_000603_110 Hb_004800_080 Hb_004800_080 Hb_009382_010--Hb_004800_080 Hb_009382_010--Hb_002725_120 Hb_000291_050 Hb_000291_050 Hb_009382_010--Hb_000291_050 Hb_008554_130 Hb_008554_130 Hb_009382_010--Hb_008554_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.35116 6.78328 3.95687 2.87367 5.68359 6.45697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7167 8.63236 10.6776 6.4613 7.9959

CAGE analysis