Hb_000603_110

Information

Type -
Description -
Location Contig603: 118111-120595
Sequence    

Annotation

kegg
ID rcu:RCOM_0707700
description copper transporter, putative
nr
ID XP_002516155.1
description copper transporter, putative [Ricinus communis]
swissprot
ID Q93VM8
description Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1
trembl
ID B9RQY6
description Copper transporter, putative OS=Ricinus communis GN=RCOM_0707700 PE=4 SV=1
Gene Ontology
ID GO:0005773
description copper transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_110 0.0 - - copper transporter, putative [Ricinus communis]
2 Hb_009382_010 0.0756467263 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_001085_060 0.0800565551 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
4 Hb_002316_150 0.0803944048 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_007441_220 0.0807016024 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
6 Hb_000041_100 0.0844650861 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_008554_130 0.0920641811 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
8 Hb_070256_010 0.0921177443 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
9 Hb_004800_080 0.0923910304 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
10 Hb_000792_010 0.0930525787 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
11 Hb_001318_270 0.0941029373 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
12 Hb_000041_110 0.0960353864 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
13 Hb_000329_710 0.0974985447 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
14 Hb_001257_010 0.0980797094 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
15 Hb_002725_120 0.0985567711 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
16 Hb_002391_310 0.09965094 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
17 Hb_002518_260 0.1000488415 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
18 Hb_002235_040 0.1004579999 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
19 Hb_003688_150 0.1006883525 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_000270_670 0.1012348923 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_110 Hb_000603_110 Hb_009382_010 Hb_009382_010 Hb_000603_110--Hb_009382_010 Hb_001085_060 Hb_001085_060 Hb_000603_110--Hb_001085_060 Hb_002316_150 Hb_002316_150 Hb_000603_110--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000603_110--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_000603_110--Hb_000041_100 Hb_008554_130 Hb_008554_130 Hb_000603_110--Hb_008554_130 Hb_004800_080 Hb_004800_080 Hb_009382_010--Hb_004800_080 Hb_002725_120 Hb_002725_120 Hb_009382_010--Hb_002725_120 Hb_000227_120 Hb_000227_120 Hb_009382_010--Hb_000227_120 Hb_000291_050 Hb_000291_050 Hb_009382_010--Hb_000291_050 Hb_009382_010--Hb_008554_130 Hb_001085_060--Hb_007441_220 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000107_420 Hb_000107_420 Hb_001085_060--Hb_000107_420 Hb_001085_060--Hb_002316_150 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_007441_220--Hb_000041_100 Hb_007441_220--Hb_000270_670 Hb_001999_090 Hb_001999_090 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_008554_130--Hb_004800_080 Hb_009767_110 Hb_009767_110 Hb_008554_130--Hb_009767_110 Hb_005496_130 Hb_005496_130 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8662 23.0886 9.24593 8.8659 18.2753 19.4655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.236 24.5482 28.815 20.9203 26.1934

CAGE analysis