Hb_009382_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig9382: 11039-13273
Sequence    

Annotation

kegg
ID rcu:RCOM_1632080
description DNA binding protein, putative
nr
ID XP_002517275.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SNB4
description Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1
trembl
ID B9RU56
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1632080 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor pcl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63023: 11064-13468
cDNA
(Sanger)
(ID:Location)		 006_P01.ab1: 11064-11456

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009382_010 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_000603_110 0.0756467263 - - copper transporter, putative [Ricinus communis]
3 Hb_004800_080 0.0778617391 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
4 Hb_002725_120 0.0832356298 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
5 Hb_000227_120 0.0853411382 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000291_050 0.0854092256 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
7 Hb_008554_130 0.089252425 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
8 Hb_001318_270 0.0896553837 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
9 Hb_070256_010 0.0922238644 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
10 Hb_001671_010 0.0926078999 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
11 Hb_002391_310 0.092642517 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
12 Hb_005496_130 0.0926884706 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
13 Hb_003142_020 0.0932157783 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
14 Hb_000230_500 0.0934420942 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
15 Hb_009486_060 0.0959396327 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
16 Hb_000352_270 0.0966528718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
17 Hb_002316_150 0.0974995562 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
18 Hb_009486_140 0.0975974791 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
19 Hb_009767_110 0.0984160576 - - -
20 Hb_000329_710 0.0989460903 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009382_010 Hb_009382_010 Hb_000603_110 Hb_000603_110 Hb_009382_010--Hb_000603_110 Hb_004800_080 Hb_004800_080 Hb_009382_010--Hb_004800_080 Hb_002725_120 Hb_002725_120 Hb_009382_010--Hb_002725_120 Hb_000227_120 Hb_000227_120 Hb_009382_010--Hb_000227_120 Hb_000291_050 Hb_000291_050 Hb_009382_010--Hb_000291_050 Hb_008554_130 Hb_008554_130 Hb_009382_010--Hb_008554_130 Hb_001085_060 Hb_001085_060 Hb_000603_110--Hb_001085_060 Hb_002316_150 Hb_002316_150 Hb_000603_110--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000603_110--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_000603_110--Hb_000041_100 Hb_000603_110--Hb_008554_130 Hb_004800_080--Hb_008554_130 Hb_167498_010 Hb_167498_010 Hb_004800_080--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_004800_080--Hb_120327_010 Hb_002391_310 Hb_002391_310 Hb_004800_080--Hb_002391_310 Hb_007254_070 Hb_007254_070 Hb_004800_080--Hb_007254_070 Hb_001369_730 Hb_001369_730 Hb_004800_080--Hb_001369_730 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250 Hb_000227_120--Hb_003142_020 Hb_003106_060 Hb_003106_060 Hb_000227_120--Hb_003106_060 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000291_050--Hb_000165_250 Hb_000291_050--Hb_006649_050 Hb_000291_050--Hb_005496_130 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_008554_130--Hb_009767_110 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_008554_130--Hb_001369_730 Hb_008554_130--Hb_167498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2085 17.329 8.10293 4.65595 13.6961 11.8819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2228 17.285 20.7152 12.851 18.5164

CAGE analysis