Hb_002391_310

Information

Type -
Description -
Location Contig2391: 192175-193725
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021315mg
description hypothetical protein
nr
ID XP_007212815.1
description hypothetical protein PRUPE_ppa021315mg [Prunus persica]
swissprot
ID Q9STF3
description Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
trembl
ID M5WJX7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021315mg PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 019_N09.ab1: 193291-193834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_310 0.0 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
2 Hb_004800_080 0.0670347947 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
3 Hb_000056_240 0.0689720116 - - PREDICTED: cullin-3A [Jatropha curcas]
4 Hb_000556_160 0.0723280386 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_000329_710 0.073630828 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
6 Hb_000710_060 0.0747200999 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_000041_100 0.0763752781 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
8 Hb_001329_160 0.0767001491 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
9 Hb_001226_040 0.0779474492 - - protein with unknown function [Ricinus communis]
10 Hb_000866_220 0.0808010207 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
11 Hb_000189_560 0.0809453926 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_011386_010 0.0823435896 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_000041_110 0.0827040956 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
14 Hb_001838_060 0.0835567944 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
15 Hb_003371_090 0.0841316206 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
16 Hb_000181_320 0.0845945995 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
17 Hb_008554_130 0.0847199554 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
18 Hb_000250_060 0.0852784046 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
19 Hb_000003_320 0.0858253374 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_009767_110 0.0875253299 - - -

Gene co-expression network

sample Hb_002391_310 Hb_002391_310 Hb_004800_080 Hb_004800_080 Hb_002391_310--Hb_004800_080 Hb_000056_240 Hb_000056_240 Hb_002391_310--Hb_000056_240 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_000329_710 Hb_000329_710 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_000041_100 Hb_000041_100 Hb_002391_310--Hb_000041_100 Hb_008554_130 Hb_008554_130 Hb_004800_080--Hb_008554_130 Hb_167498_010 Hb_167498_010 Hb_004800_080--Hb_167498_010 Hb_120327_010 Hb_120327_010 Hb_004800_080--Hb_120327_010 Hb_007254_070 Hb_007254_070 Hb_004800_080--Hb_007254_070 Hb_001369_730 Hb_001369_730 Hb_004800_080--Hb_001369_730 Hb_000866_220 Hb_000866_220 Hb_000056_240--Hb_000866_220 Hb_004374_070 Hb_004374_070 Hb_000056_240--Hb_004374_070 Hb_085863_030 Hb_085863_030 Hb_000056_240--Hb_085863_030 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_000041_100--Hb_011386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27191 1.48221 0.576233 0.715532 0.812479 1.15744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17205 1.74963 1.51223 1.37727 1.18876

CAGE analysis