Hb_004374_070

Information

Type -
Description -
Location Contig4374: 77338-79767
Sequence    

Annotation

kegg
ID pmum:103337583
description putative pentatricopeptide repeat-containing protein At3g25970
nr
ID XP_012087206.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
swissprot
ID Q9SVP7
description Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
trembl
ID A0A067JNE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20553 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42494: 76645-77672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
2 Hb_000056_240 0.0693888595 - - PREDICTED: cullin-3A [Jatropha curcas]
3 Hb_000041_100 0.0736080853 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
4 Hb_003371_090 0.0789495953 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
5 Hb_000866_220 0.0803844512 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
6 Hb_007483_100 0.0813979818 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
7 Hb_002725_120 0.0820708971 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
8 Hb_008725_260 0.0847644714 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
9 Hb_085863_030 0.0852006848 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
10 Hb_009178_030 0.0855709923 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002110_150 0.0856907454 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
12 Hb_001085_060 0.0863490916 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
13 Hb_000206_240 0.0864123129 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005188_020 0.0869212881 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
15 Hb_000696_150 0.0870064096 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
16 Hb_005015_070 0.087226879 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
17 Hb_000107_420 0.0899605371 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
18 Hb_000213_100 0.091658002 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
19 Hb_004586_340 0.0949686722 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_007532_030 0.0949696429 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]

Gene co-expression network

sample Hb_004374_070 Hb_004374_070 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_000056_240--Hb_000866_220 Hb_002391_310 Hb_002391_310 Hb_000056_240--Hb_002391_310 Hb_085863_030 Hb_085863_030 Hb_000056_240--Hb_085863_030 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_002678_020 Hb_002678_020 Hb_007483_100--Hb_002678_020 Hb_004052_090 Hb_004052_090 Hb_007483_100--Hb_004052_090 Hb_009178_030 Hb_009178_030 Hb_007483_100--Hb_009178_030 Hb_000206_240 Hb_000206_240 Hb_007483_100--Hb_000206_240 Hb_000258_270 Hb_000258_270 Hb_007483_100--Hb_000258_270 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27315 1.86292 0.678387 0.757657 1.01077 1.67562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03867 2.03611 2.62259 0.945399 1.27927

CAGE analysis