Hb_009178_030

Information

Type -
Description -
Location Contig9178: 14228-15136
Sequence    

Annotation

kegg
ID rcu:RCOM_0204850
description hypothetical protein
nr
ID XP_002527964.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0204850 PE=4 SV=1
Gene Ontology
ID GO:0005622
description e3 ubiquitin-protein ligase rnf34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62302: 12953-16426 , PASA_asmbl_62303: 13025-16424
cDNA
(Sanger)
(ID:Location)		 045_N13.ab1: 14760-16424 , 049_N19.ab1: 14956-16424

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008725_260 0.0559605017 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
3 Hb_007532_030 0.0610552795 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
4 Hb_085863_030 0.0677217788 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
5 Hb_000866_220 0.0688209203 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
6 Hb_000003_250 0.0706914561 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_001014_030 0.0724602608 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000512_060 0.0735373763 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
9 Hb_010128_080 0.0745893816 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
10 Hb_000086_400 0.0751863123 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_003211_020 0.0776256298 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
12 Hb_002046_180 0.078038114 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
13 Hb_002110_150 0.0786676352 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
14 Hb_000331_670 0.0798170438 - - PREDICTED: protein tipD [Jatropha curcas]
15 Hb_040575_010 0.0800896 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
16 Hb_004907_110 0.0813826204 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
17 Hb_005348_140 0.0819891962 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
18 Hb_001633_210 0.0829923798 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
19 Hb_007483_100 0.0833270711 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
20 Hb_000056_240 0.0839581555 - - PREDICTED: cullin-3A [Jatropha curcas]

Gene co-expression network

sample Hb_009178_030 Hb_009178_030 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_008725_260--Hb_000866_220 Hb_000876_070 Hb_000876_070 Hb_008725_260--Hb_000876_070 Hb_008725_260--Hb_007532_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_085863_030--Hb_000866_220 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_000866_220--Hb_000056_240 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_000866_220--Hb_002046_180 Hb_000866_220--Hb_000189_560 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_000003_250--Hb_002046_180 Hb_000003_250--Hb_010128_080 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000840_250 Hb_000840_250 Hb_001014_030--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_001014_030--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_001014_030--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_001014_030--Hb_000297_010 Hb_002450_020 Hb_002450_020 Hb_001014_030--Hb_002450_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6941 29.6425 16.9443 23.5411 18.2885 37.2753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6336 36.1373 52.3455 21.4907 17.3428

CAGE analysis