Hb_000056_240

Information

Type -
Description -
Location Contig56: 383544-388735
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10320g
description POPTRDRAFT_566300; cullin family protein
nr
ID XP_012067623.1
description PREDICTED: cullin-3A [Jatropha curcas]
swissprot
ID Q9ZVH4
description Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
trembl
ID A0A067L1V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15590 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48719: 385447-386973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_240 0.0 - - PREDICTED: cullin-3A [Jatropha curcas]
2 Hb_000866_220 0.04706976 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
3 Hb_002391_310 0.0689720116 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
4 Hb_004374_070 0.0693888595 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
5 Hb_085863_030 0.0706725229 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
6 Hb_002046_180 0.0726760049 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
7 Hb_002110_150 0.0748450512 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
8 Hb_001157_040 0.0757044945 - - casein kinase, putative [Ricinus communis]
9 Hb_000041_100 0.0758815807 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
10 Hb_008725_260 0.0763121512 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_001226_040 0.0771107165 - - protein with unknown function [Ricinus communis]
12 Hb_001242_060 0.0777414776 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
13 Hb_009767_110 0.0779643637 - - -
14 Hb_000538_270 0.0814618497 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
15 Hb_012019_010 0.0818954396 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
16 Hb_010128_080 0.0826070777 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
17 Hb_009178_030 0.0839581555 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003371_090 0.0853879411 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_004800_080 0.0856426732 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
20 Hb_015934_040 0.0860422881 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000056_240 Hb_000056_240 Hb_000866_220 Hb_000866_220 Hb_000056_240--Hb_000866_220 Hb_002391_310 Hb_002391_310 Hb_000056_240--Hb_002391_310 Hb_004374_070 Hb_004374_070 Hb_000056_240--Hb_004374_070 Hb_085863_030 Hb_085863_030 Hb_000056_240--Hb_085863_030 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_004800_080 Hb_004800_080 Hb_002391_310--Hb_004800_080 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_000329_710 Hb_000329_710 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_000041_100 Hb_000041_100 Hb_002391_310--Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_085863_030--Hb_000866_220 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_005779_060 Hb_005779_060 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100 Hb_002110_150--Hb_008725_260 Hb_002110_150--Hb_005779_060 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9339 43.6135 19.6578 26.363 31.1131 41.1931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2521 63.5254 61.6667 34.5812 32.8464

CAGE analysis