Hb_085863_030

Information

Type -
Description -
Location Contig85863: 12722-14701
Sequence    

Annotation

kegg
ID rcu:RCOM_0826200
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078934.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
swissprot
ID Q9C866
description Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
trembl
ID B9STP1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0826200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60669: 13894-14295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085863_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
2 Hb_000086_400 0.0489000422 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_009178_030 0.0677217788 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000056_240 0.0706725229 - - PREDICTED: cullin-3A [Jatropha curcas]
5 Hb_008725_260 0.0764122965 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_016901_010 0.0774003462 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
7 Hb_000866_220 0.0789703368 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
8 Hb_000000_250 0.0797060909 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
9 Hb_000063_140 0.0836961393 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
10 Hb_004724_080 0.0844959958 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004374_070 0.0852006848 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
12 Hb_000258_270 0.0864533317 - - PREDICTED: cullin-3A [Jatropha curcas]
13 Hb_002435_120 0.0870355862 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_010128_080 0.0876705893 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
15 Hb_001242_060 0.0884903394 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
16 Hb_004586_340 0.0886740398 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
17 Hb_002046_180 0.0896487751 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_000510_320 0.0896858943 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
19 Hb_000007_150 0.0897644896 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
20 Hb_000512_060 0.0901690391 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]

Gene co-expression network

sample Hb_085863_030 Hb_085863_030 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_000086_400--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_000056_240--Hb_000866_220 Hb_002391_310 Hb_002391_310 Hb_000056_240--Hb_002391_310 Hb_004374_070 Hb_004374_070 Hb_000056_240--Hb_004374_070 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_008725_260--Hb_002046_180 Hb_008725_260--Hb_000866_220 Hb_008725_260--Hb_000876_070 Hb_008725_260--Hb_007532_030 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7778 1.45181 0.901411 1.26536 1.48692 2.22354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20954 2.7294 3.37016 1.31461 1.13812

CAGE analysis