Hb_000016_250

Information

Type -
Description -
Location Contig16: 257659-261142
Sequence    

Annotation

kegg
ID tgu:101233263
description embryonic polyadenylate-binding protein A-like
nr
ID CCU99535.1
description unnamed protein product [Malassezia sympodialis ATCC 42132]
swissprot
ID Q6DEY7
description Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1
trembl
ID M5EPA6
description Polyadenylate-binding protein OS=Malassezia sympodialis (strain ATCC 42132) GN=MSY001_2241 PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor rs40 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14295: 257662-261768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_250 0.0 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
2 Hb_000563_320 0.040785754 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
3 Hb_005779_060 0.0427612588 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
4 Hb_001157_040 0.0528244791 - - casein kinase, putative [Ricinus communis]
5 Hb_000096_070 0.0536888108 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
6 Hb_001242_060 0.0556119429 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
7 Hb_031527_040 0.0568904111 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
8 Hb_002110_150 0.0589419477 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_003058_190 0.0604330464 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
10 Hb_011995_010 0.0628326208 - - dc50, putative [Ricinus communis]
11 Hb_002530_030 0.0644029263 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
12 Hb_000030_300 0.0663570643 - - Thioredoxin, putative [Ricinus communis]
13 Hb_000876_070 0.0667148617 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_000757_060 0.0671579496 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
15 Hb_010618_010 0.0675240479 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_000504_140 0.0689278968 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
17 Hb_000538_270 0.0690328896 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
18 Hb_002739_100 0.0707660559 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
19 Hb_000062_220 0.0712328309 - - BnaC02g35870D [Brassica napus]
20 Hb_007691_030 0.0721457524 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_000016_250 Hb_000016_250 Hb_000563_320 Hb_000563_320 Hb_000016_250--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_000016_250--Hb_005779_060 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_000016_250--Hb_031527_040 Hb_000563_320--Hb_001157_040 Hb_000563_320--Hb_031527_040 Hb_000563_320--Hb_005779_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_001242_060--Hb_031527_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_001242_060--Hb_005779_060 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_031527_040--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9132 20.3802 16.739 13.0507 24.504 24.0205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0997 28.6675 29.5141 15.9582 13.2416

CAGE analysis