Hb_001838_060

Information

Type transcription factor
Description TF Family: bZIP
Location Contig1838: 102356-114197
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03590g
description POPTRDRAFT_825048; DNA-binding protein VBP1
nr
ID XP_012082564.1
description PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID A0A067K2L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16647 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor hbp-1b -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17954: 102364-114309 , PASA_asmbl_17955: 102360-114356 , PASA_asmbl_17956: 105474-114272 , PASA_asmbl_17957: 111914-112133
cDNA
(Sanger)
(ID:Location)		 030_P17.ab1: 113578-114272 , 053_N24.ab1: 113543-114272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001838_060 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
2 Hb_001157_040 0.0478489853 - - casein kinase, putative [Ricinus communis]
3 Hb_001329_160 0.0573855158 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
4 Hb_000976_310 0.0608785936 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
5 Hb_007163_120 0.0622800171 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_001818_070 0.0628232145 - - carbon catabolite repressor protein, putative [Ricinus communis]
7 Hb_000331_670 0.0645705882 - - PREDICTED: protein tipD [Jatropha curcas]
8 Hb_003211_020 0.0653553753 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
9 Hb_000172_430 0.0654508218 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011491_010 0.0657047433 - - Protein YME1, putative [Ricinus communis]
11 Hb_015934_040 0.0680430021 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
12 Hb_000538_270 0.0696365518 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
13 Hb_002686_030 0.0697311968 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
14 Hb_000866_220 0.0710292348 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
15 Hb_000049_260 0.0727302758 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_033772_030 0.0758122083 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
17 Hb_000395_130 0.0763605723 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
18 Hb_012779_090 0.076462378 - - PREDICTED: lipase member N [Jatropha curcas]
19 Hb_021576_110 0.0769423654 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
20 Hb_007765_110 0.0771266331 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_001838_060 Hb_001838_060 Hb_001157_040 Hb_001157_040 Hb_001838_060--Hb_001157_040 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_001818_070 Hb_001818_070 Hb_001838_060--Hb_001818_070 Hb_000331_670 Hb_000331_670 Hb_001838_060--Hb_000331_670 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_001329_160--Hb_000976_310 Hb_008959_020 Hb_008959_020 Hb_001329_160--Hb_008959_020 Hb_001080_230 Hb_001080_230 Hb_001329_160--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_001329_160--Hb_000395_130 Hb_001546_080 Hb_001546_080 Hb_001329_160--Hb_001546_080 Hb_000976_310--Hb_001157_040 Hb_000976_310--Hb_008959_020 Hb_000976_310--Hb_001546_080 Hb_000189_560 Hb_000189_560 Hb_000976_310--Hb_000189_560 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_140506_010 Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_001818_070--Hb_011491_010 Hb_004767_050 Hb_004767_050 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_000331_670--Hb_003211_020 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2922 29.1087 14.9313 12.7018 17.605 22.1726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3682 27.2084 23.2645 18.6399 15.1075

CAGE analysis