Hb_003370_030

Information

Type -
Description -
Location Contig3370: 50587-54085
Sequence    

Annotation

kegg
ID rcu:RCOM_1289780
description hypothetical protein
nr
ID XP_012074009.1
description PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08594 PE=4 SV=1
Gene Ontology
ID GO:0016787
description trypsin family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35276: 50539-83538 , PASA_asmbl_35277: 53343-53716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003370_030 0.0 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
2 Hb_007163_120 0.0452096877 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
3 Hb_001114_140 0.0552957048 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
4 Hb_005000_260 0.0568841481 - - recA family protein [Populus trichocarpa]
5 Hb_033772_030 0.0601581372 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
6 Hb_001266_100 0.0608142303 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
7 Hb_003464_090 0.0617099013 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_006922_010 0.0647663413 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
9 Hb_007765_110 0.0662473048 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
10 Hb_000107_490 0.06755724 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
11 Hb_167498_010 0.0685389825 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
12 Hb_011491_010 0.0703184859 - - Protein YME1, putative [Ricinus communis]
13 Hb_000922_360 0.0706569455 - - -
14 Hb_002043_140 0.0711356259 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
15 Hb_000317_370 0.0711439971 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
16 Hb_000696_230 0.0719146059 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
17 Hb_001408_040 0.0729008748 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_000173_490 0.0735418382 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
19 Hb_002900_090 0.0742214405 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
20 Hb_001005_190 0.0746069974 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003370_030 Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_033772_030 Hb_033772_030 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003464_090 Hb_003464_090 Hb_003370_030--Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_167498_010 Hb_167498_010 Hb_001114_140--Hb_167498_010 Hb_001114_140--Hb_001266_100 Hb_001114_140--Hb_007163_120 Hb_001369_730 Hb_001369_730 Hb_001114_140--Hb_001369_730 Hb_000107_490 Hb_000107_490 Hb_001114_140--Hb_000107_490 Hb_006922_010 Hb_006922_010 Hb_005000_260--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_005000_260--Hb_002900_090 Hb_000739_100 Hb_000739_100 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_005000_260--Hb_007163_120 Hb_033772_030--Hb_006922_010 Hb_033772_030--Hb_002900_090 Hb_033772_030--Hb_007765_110 Hb_033772_030--Hb_003464_090 Hb_000181_320 Hb_000181_320 Hb_001266_100--Hb_000181_320 Hb_001614_060 Hb_001614_060 Hb_001266_100--Hb_001614_060 Hb_001329_160 Hb_001329_160 Hb_001266_100--Hb_001329_160 Hb_000003_190 Hb_000003_190 Hb_001266_100--Hb_000003_190 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_003464_090--Hb_007765_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96931 9.85419 4.20444 6.44727 6.38739 6.74256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21586 6.6294 6.57715 8.19265 5.16306

CAGE analysis