Hb_001614_060

Information

Type -
Description -
Location Contig1614: 135177-143868
Sequence    

Annotation

kegg
ID rcu:RCOM_0298500
description ATP-dependent RNA helicase, putative
nr
ID KDP37478.1
description hypothetical protein JCGZ_06918 [Jatropha curcas]
swissprot
ID Q17R09
description Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1
trembl
ID A0A067KR35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06918 PE=4 SV=1
Gene Ontology
ID GO:0003676
description pre-mrna-splicing factor atp-dependent rna helicase prp16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14463: 139124-139758 , PASA_asmbl_14464: 140621-142348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001614_060 0.0 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
2 Hb_010712_050 0.0613784987 - - PREDICTED: protein ELC-like [Jatropha curcas]
3 Hb_001266_100 0.062173864 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
4 Hb_003768_050 0.0708022237 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
5 Hb_001080_230 0.073201581 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_003030_060 0.0737918113 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
7 Hb_000025_280 0.0787574627 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
8 Hb_000181_320 0.0813086586 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
9 Hb_000003_190 0.0827294552 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
10 Hb_011618_090 0.0830285402 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_003529_170 0.083043703 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
12 Hb_011537_050 0.0833115426 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
13 Hb_001104_190 0.0834902605 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_006520_040 0.0845020505 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
15 Hb_000920_300 0.0848212951 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
16 Hb_013399_070 0.0855412021 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
17 Hb_005542_140 0.0860180706 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
18 Hb_003913_070 0.0862467821 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
19 Hb_000069_470 0.0862588204 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_001488_180 0.0863419904 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001614_060 Hb_001614_060 Hb_010712_050 Hb_010712_050 Hb_001614_060--Hb_010712_050 Hb_001266_100 Hb_001266_100 Hb_001614_060--Hb_001266_100 Hb_003768_050 Hb_003768_050 Hb_001614_060--Hb_003768_050 Hb_001080_230 Hb_001080_230 Hb_001614_060--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_001614_060--Hb_003030_060 Hb_000025_280 Hb_000025_280 Hb_001614_060--Hb_000025_280 Hb_010712_050--Hb_003030_060 Hb_012194_030 Hb_012194_030 Hb_010712_050--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_010712_050--Hb_000329_370 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_003835_070 Hb_003835_070 Hb_010712_050--Hb_003835_070 Hb_000181_320 Hb_000181_320 Hb_001266_100--Hb_000181_320 Hb_003370_030 Hb_003370_030 Hb_001266_100--Hb_003370_030 Hb_001114_140 Hb_001114_140 Hb_001266_100--Hb_001114_140 Hb_001329_160 Hb_001329_160 Hb_001266_100--Hb_001329_160 Hb_000003_190 Hb_000003_190 Hb_001266_100--Hb_000003_190 Hb_003768_050--Hb_002234_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_001080_230--Hb_003030_060 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_003030_060--Hb_012194_030 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.81578 12.1985 4.69779 5.09765 5.13263 6.44
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10493 6.55993 5.34439 9.50778 8.68964

CAGE analysis