Hb_000069_470

Information

Type -
Description -
Location Contig69: 480045-490217
Sequence    

Annotation

kegg
ID rcu:RCOM_0719270
description hypothetical protein
nr
ID XP_012083227.1
description PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14272 PE=4 SV=1
Gene Ontology
ID GO:0016779
description poly rna polymerase cid14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54242: 479970-483995 , PASA_asmbl_54243: 480427-481286 , PASA_asmbl_54244: 484024-489650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_470 0.0 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
2 Hb_011242_060 0.0458698467 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
3 Hb_031042_050 0.0515165032 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
4 Hb_006117_080 0.0548372589 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_000025_280 0.0554872841 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
6 Hb_001104_190 0.0557552351 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
7 Hb_004483_040 0.0557710214 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
8 Hb_002253_080 0.0581026876 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
9 Hb_000321_150 0.0591399107 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
10 Hb_003729_030 0.0627740707 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
11 Hb_003470_080 0.0628246483 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
12 Hb_001545_150 0.0660166324 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
13 Hb_159558_010 0.0667546233 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
14 Hb_000176_100 0.0671741019 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
15 Hb_009767_080 0.0682321321 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
16 Hb_002960_080 0.0689077269 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
17 Hb_000665_230 0.0696385381 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
18 Hb_002085_030 0.0706325526 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_009150_020 0.0707676401 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
20 Hb_005542_140 0.0708595951 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]

Gene co-expression network

sample Hb_000069_470 Hb_000069_470 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000836_020 Hb_000836_020 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_006117_080--Hb_001104_190 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_000025_280--Hb_004483_040 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_000025_280--Hb_031042_050 Hb_003470_080 Hb_003470_080 Hb_001104_190--Hb_003470_080 Hb_001104_190--Hb_000321_150 Hb_001080_230 Hb_001080_230 Hb_001104_190--Hb_001080_230 Hb_000599_190 Hb_000599_190 Hb_001104_190--Hb_000599_190 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_000661_130 Hb_000661_130 Hb_004483_040--Hb_000661_130 Hb_005539_090 Hb_005539_090 Hb_004483_040--Hb_005539_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12473 19.6371 6.55007 8.64008 9.08338 10.7533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83722 6.73387 8.00973 9.69169 11.4878

CAGE analysis