Hb_004410_120

Information

Type -
Description -
Location Contig4410: 105574-114511
Sequence    

Annotation

kegg
ID cit:102609555
description uncharacterized LOC102609555
nr
ID XP_012071966.1
description PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
swissprot
ID Q99L90
description Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1
trembl
ID A0A067KUC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04508 PE=4 SV=1
Gene Ontology
ID GO:0005515
description forkhead-associated domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42670: 105603-110103 , PASA_asmbl_42671: 110398-110538 , PASA_asmbl_42672: 110583-111195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_120 0.0 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
2 Hb_031042_050 0.0569083768 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_013358_010 0.0652066478 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
4 Hb_012055_040 0.0657208209 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_000037_220 0.071996576 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
6 Hb_001322_130 0.0729367819 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
7 Hb_000174_290 0.0741845797 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
8 Hb_004645_070 0.0756523256 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
9 Hb_000003_100 0.0767595365 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
10 Hb_000028_130 0.0770294538 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
11 Hb_000494_050 0.0776232794 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_031527_030 0.0780581352 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_000094_310 0.0797763014 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
14 Hb_008937_010 0.0803250697 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
15 Hb_007810_110 0.0804277644 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
16 Hb_000556_220 0.0806800161 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
17 Hb_143766_060 0.0815703331 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
18 Hb_003729_030 0.0822445946 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_003805_040 0.0832222533 - - Sacsin [Glycine soja]
20 Hb_005563_060 0.0833781922 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004410_120 Hb_004410_120 Hb_031042_050 Hb_031042_050 Hb_004410_120--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_004410_120--Hb_013358_010 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_001322_130 Hb_001322_130 Hb_004410_120--Hb_001322_130 Hb_000174_290 Hb_000174_290 Hb_004410_120--Hb_000174_290 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012518_070 Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_001322_130--Hb_002253_080 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020 Hb_003729_030 Hb_003729_030 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_000174_290--Hb_019430_020 Hb_000174_290--Hb_001322_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46894 5.44006 2.44074 4.6211 3.54444 3.46966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53186 1.61447 3.48269 3.25619 3.70089

CAGE analysis