Hb_143766_060

Information

Type -
Description -
Location Contig143766: 40672-43201
Sequence    

Annotation

kegg
ID rcu:RCOM_0663350
description hypothetical protein
nr
ID XP_012076802.1
description PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
swissprot
ID Q9M0E1
description F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana GN=At4g29420 PE=2 SV=1
trembl
ID A0A067KC23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07322 PE=4 SV=1
Gene Ontology
ID GO:0043229
description f-box lrr-repeat protein at4g29420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11555: 40725-43013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_060 0.0 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
2 Hb_031042_050 0.0688955427 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_013358_010 0.0694450821 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
4 Hb_001322_130 0.0715663075 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
5 Hb_001279_120 0.0719666591 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
6 Hb_000479_070 0.0769228368 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
7 Hb_001366_310 0.0803601401 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
8 Hb_004410_120 0.0815703331 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
9 Hb_007810_110 0.0815943331 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
10 Hb_000317_370 0.0838214054 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
11 Hb_000866_460 0.0838780605 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
12 Hb_001545_150 0.0851044338 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
13 Hb_030827_020 0.0868517148 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
14 Hb_003729_030 0.0872506956 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
15 Hb_002329_020 0.087537197 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
16 Hb_000976_210 0.0876385793 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
17 Hb_000028_130 0.0877612466 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
18 Hb_002783_040 0.0887706183 transcription factor TF Family: IWS1 -
19 Hb_004553_030 0.0903752164 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
20 Hb_002253_080 0.0907676761 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_143766_060 Hb_143766_060 Hb_031042_050 Hb_031042_050 Hb_143766_060--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_143766_060--Hb_013358_010 Hb_001322_130 Hb_001322_130 Hb_143766_060--Hb_001322_130 Hb_001279_120 Hb_001279_120 Hb_143766_060--Hb_001279_120 Hb_000479_070 Hb_000479_070 Hb_143766_060--Hb_000479_070 Hb_001366_310 Hb_001366_310 Hb_143766_060--Hb_001366_310 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_013358_010--Hb_004410_120 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_000174_290 Hb_000174_290 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_001322_130--Hb_002253_080 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020 Hb_001279_120--Hb_001545_150 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_001473_110 Hb_001473_110 Hb_000479_070--Hb_001473_110 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_000479_070--Hb_031042_050 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180 Hb_003544_110 Hb_003544_110 Hb_001366_310--Hb_003544_110 Hb_012490_090 Hb_012490_090 Hb_001366_310--Hb_012490_090 Hb_000976_210 Hb_000976_210 Hb_001366_310--Hb_000976_210 Hb_003494_020 Hb_003494_020 Hb_001366_310--Hb_003494_020 Hb_000392_150 Hb_000392_150 Hb_001366_310--Hb_000392_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.21191 12.996 5.7627 7.79783 7.81032 5.20263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62448 4.14459 9.24961 5.76709 8.02075

CAGE analysis