Hb_001473_110

Information

Type -
Description -
Location Contig1473: 102218-108211
Sequence    

Annotation

kegg
ID rcu:RCOM_1020490
description protein binding protein, putative
nr
ID XP_012092651.1
description PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
swissprot
ID Q5F259
description Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1
trembl
ID A0A067J996
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11988: 101899-108090 , PASA_asmbl_11989: 102087-108131 , PASA_asmbl_11990: 102087-108097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_110 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
2 Hb_000479_070 0.0420564204 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_000028_130 0.0525714953 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
4 Hb_001488_180 0.0565005432 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
5 Hb_001545_150 0.057287998 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
6 Hb_000347_390 0.0602742031 - - PREDICTED: exportin-T [Jatropha curcas]
7 Hb_000347_400 0.0613495464 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_031042_050 0.0615975315 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
9 Hb_003918_030 0.0617650238 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
10 Hb_005551_020 0.0667293397 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_000017_220 0.0668032242 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
12 Hb_001635_120 0.0674972384 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
13 Hb_000008_240 0.0681631529 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001716_020 0.0683355172 - - hydrolase, putative [Ricinus communis]
15 Hb_000025_280 0.0727647992 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
16 Hb_001089_050 0.073806018 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
17 Hb_001405_160 0.0747011701 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
18 Hb_000069_470 0.0750106771 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
19 Hb_000024_040 0.0754633057 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
20 Hb_002492_010 0.0759282699 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_001473_110 Hb_001473_110 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001488_180 Hb_001488_180 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_031042_050 Hb_031042_050 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_000479_070--Hb_001488_180 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_001488_180--Hb_000028_130 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_001488_180--Hb_000017_220 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_001545_150--Hb_003918_030 Hb_001545_150--Hb_001279_120 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_003768_050 Hb_003768_050 Hb_000347_390--Hb_003768_050 Hb_000347_390--Hb_000347_400 Hb_005551_020 Hb_005551_020 Hb_000347_390--Hb_005551_020 Hb_000347_390--Hb_000017_220 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92399 19.1288 9.23949 11.7162 6.15864 9.49751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76214 6.89236 8.96961 9.56046 12.4183

CAGE analysis