Hb_003768_050

Information

Type -
Description -
Location Contig3768: 53454-60851
Sequence    

Annotation

kegg
ID cic:CICLE_v10010896mg
description hypothetical protein
nr
ID XP_012084815.1
description PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38390: 53371-54612 , PASA_asmbl_38393: 58188-60809 , PASA_asmbl_38394: 58548-60809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_050 0.0 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
2 Hb_002234_090 0.0634377979 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
3 Hb_000347_390 0.063877628 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_000025_280 0.0676961857 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
5 Hb_005551_020 0.0680690106 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
6 Hb_001614_060 0.0708022237 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
7 Hb_000017_220 0.0715170667 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
8 Hb_013399_070 0.0719105371 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
9 Hb_010222_070 0.0724028493 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_000024_040 0.0746572611 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_001473_110 0.0761336533 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_010712_050 0.0761341232 - - PREDICTED: protein ELC-like [Jatropha curcas]
13 Hb_011618_090 0.0769395019 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
14 Hb_002960_080 0.0779200845 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
15 Hb_004586_290 0.077994024 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
16 Hb_002005_110 0.0783043621 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
17 Hb_000069_470 0.0784632537 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_001488_180 0.0784789161 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
19 Hb_003835_070 0.078578335 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
20 Hb_000028_130 0.0804309047 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003768_050 Hb_003768_050 Hb_002234_090 Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_001473_110 Hb_001473_110 Hb_000347_390--Hb_001473_110 Hb_000347_400 Hb_000347_400 Hb_000347_390--Hb_000347_400 Hb_000347_390--Hb_005551_020 Hb_000347_390--Hb_000017_220 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_005551_020--Hb_001473_110 Hb_005551_020--Hb_002234_090 Hb_005551_020--Hb_000347_400 Hb_005551_020--Hb_000024_040 Hb_001614_060--Hb_010712_050 Hb_001266_100 Hb_001266_100 Hb_001614_060--Hb_001266_100 Hb_001080_230 Hb_001080_230 Hb_001614_060--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_001614_060--Hb_003030_060 Hb_001614_060--Hb_000025_280 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7364 12.8904 5.18556 5.91562 4.19965 7.73196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72018 4.93399 6.66353 8.68836 6.74021

CAGE analysis