Hb_000024_040

Information

Type -
Description -
Location Contig24: 31503-40194
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12580g
description POPTRDRAFT_820653; hydroxyproline-rich glycoprotein
nr
ID XP_012075686.1
description PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
swissprot
ID Q8T7K0
description ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1
trembl
ID A0A067KFH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09274 PE=4 SV=1
Gene Ontology
ID GO:0005515
description alg-2 interacting protein x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25118: 31603-40067 , PASA_asmbl_25119: 32746-33048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_040 0.0 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
2 Hb_000347_390 0.0525287534 - - PREDICTED: exportin-T [Jatropha curcas]
3 Hb_001628_070 0.0626816183 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000703_200 0.0659126589 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
5 Hb_004586_290 0.0664974657 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
6 Hb_004705_020 0.0695669796 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_000479_070 0.0713444347 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_006531_020 0.072453316 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
9 Hb_010222_070 0.0725390027 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_003768_050 0.0746572611 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
11 Hb_000025_280 0.0747884124 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
12 Hb_001473_110 0.0754633057 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
13 Hb_005551_020 0.0762633691 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_001545_150 0.0776964015 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
15 Hb_001488_180 0.0781974101 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
16 Hb_000347_400 0.0790850871 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
17 Hb_005568_040 0.0794704082 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
18 Hb_000008_240 0.0795794602 - - conserved hypothetical protein [Ricinus communis]
19 Hb_022425_060 0.0820527054 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
20 Hb_000331_580 0.0832012256 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000024_040 Hb_000024_040 Hb_000347_390 Hb_000347_390 Hb_000024_040--Hb_000347_390 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_001473_110 Hb_001473_110 Hb_000347_390--Hb_001473_110 Hb_003768_050 Hb_003768_050 Hb_000347_390--Hb_003768_050 Hb_000347_400 Hb_000347_400 Hb_000347_390--Hb_000347_400 Hb_005551_020 Hb_005551_020 Hb_000347_390--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_000347_390--Hb_000017_220 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_009302_030 Hb_009302_030 Hb_000703_200--Hb_009302_030 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_005568_040 Hb_005568_040 Hb_004586_290--Hb_005568_040 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_000025_280 Hb_000025_280 Hb_004586_290--Hb_000025_280 Hb_004705_020--Hb_006531_020 Hb_004705_020--Hb_000017_220 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_000479_070--Hb_001473_110 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_031042_050 Hb_031042_050 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3384 39.6234 15.0655 18.23 13.1933 14.078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6587 10.2381 18.7118 23.8493 19.1682

CAGE analysis