Hb_000402_230

Information

Type -
Description -
Location Contig402: 231562-241327
Sequence    

Annotation

kegg
ID rcu:RCOM_1402550
description Sorting nexin-4, putative
nr
ID XP_012078672.1
description PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
swissprot
ID B9DFS6
description Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1
trembl
ID A0A067LMW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17361 PE=4 SV=1
Gene Ontology
ID GO:0035091
description sorting nexin 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39940: 231538-241280 , PASA_asmbl_39942: 232805-232928
cDNA
(Sanger)
(ID:Location)		 043_L18.ab1: 240516-241269

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_230 0.0 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
2 Hb_004143_100 0.0427077122 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001089_050 0.0442840039 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
4 Hb_000009_500 0.0497625009 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
5 Hb_008253_020 0.0526331699 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
6 Hb_003866_080 0.0530721459 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
7 Hb_011849_040 0.053190551 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_001545_150 0.0560580485 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
9 Hb_000069_130 0.0602169074 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
10 Hb_003120_080 0.0621614135 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
11 Hb_004586_290 0.0625570448 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
12 Hb_031042_050 0.0627088051 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
13 Hb_000614_210 0.0628736575 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
14 Hb_001205_200 0.0630025751 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003398_080 0.0632230911 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
16 Hb_079326_020 0.0651104951 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002492_010 0.0656241699 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
18 Hb_000809_170 0.0662216948 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
19 Hb_001716_020 0.0677864491 - - hydrolase, putative [Ricinus communis]
20 Hb_005568_040 0.0693228654 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_230 Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_001089_050 Hb_001089_050 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_001089_050--Hb_003866_080 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_000009_500--Hb_011849_040 Hb_079326_020 Hb_079326_020 Hb_000009_500--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000614_210 Hb_000614_210 Hb_000009_500--Hb_000614_210 Hb_004129_070 Hb_004129_070 Hb_008253_020--Hb_004129_070 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_002276_240 Hb_002276_240 Hb_008253_020--Hb_002276_240 Hb_008253_020--Hb_001089_050 Hb_008253_020--Hb_000009_500 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_003866_080--Hb_002492_010 Hb_011849_040--Hb_079326_020 Hb_011849_040--Hb_002026_210 Hb_011849_040--Hb_004143_100 Hb_011849_040--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3884 46.1414 22.3089 30.8359 24.7259 24.9865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1283 18.4013 20.0991 25.0649 20.6269

CAGE analysis