Hb_007810_110

Information

Type -
Description -
Location Contig7810: 80416-81618
Sequence    

Annotation

kegg
ID rcu:RCOM_1086480
description zinc finger protein, putative
nr
ID XP_012065905.1
description PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
swissprot
ID Q8K339
description DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1
trembl
ID A0A067LFI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22797 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna rna-binding protein kin17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_110 0.0 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
2 Hb_031042_050 0.0579383127 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_008253_020 0.0609834097 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
4 Hb_004129_070 0.0688161538 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
5 Hb_001279_120 0.072106796 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
6 Hb_002276_240 0.0726150687 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
7 Hb_159558_010 0.0749316729 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
8 Hb_003206_130 0.0761203358 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
9 Hb_133702_020 0.0771447477 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002253_080 0.077240917 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
11 Hb_012395_140 0.0776097338 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
12 Hb_002205_250 0.0800703149 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
13 Hb_004410_120 0.0804277644 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
14 Hb_007635_030 0.0804409661 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
15 Hb_000243_210 0.0810944799 - - protein with unknown function [Ricinus communis]
16 Hb_000069_470 0.0811972201 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_000028_130 0.0812185518 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
18 Hb_003470_080 0.0813206242 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
19 Hb_000696_050 0.0814197734 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
20 Hb_143766_060 0.0815943331 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]

Gene co-expression network

sample Hb_007810_110 Hb_007810_110 Hb_031042_050 Hb_031042_050 Hb_007810_110--Hb_031042_050 Hb_008253_020 Hb_008253_020 Hb_007810_110--Hb_008253_020 Hb_004129_070 Hb_004129_070 Hb_007810_110--Hb_004129_070 Hb_001279_120 Hb_001279_120 Hb_007810_110--Hb_001279_120 Hb_002276_240 Hb_002276_240 Hb_007810_110--Hb_002276_240 Hb_159558_010 Hb_159558_010 Hb_007810_110--Hb_159558_010 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_008253_020--Hb_004129_070 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_004129_070--Hb_002276_240 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_001279_120--Hb_001545_150 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_001767_140 Hb_001767_140 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5275 24.3431 11.4683 19.0562 19.3654 14.1371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.81798 10.7864 12.55 14.2622 18.2429

CAGE analysis