Hb_001147_110

Information

Type -
Description -
Location Contig1147: 163829-187002
Sequence    

Annotation

kegg
ID vvi:100255051
description dynamin-2A
nr
ID XP_012082624.1
description PREDICTED: dynamin-2A-like [Jatropha curcas]
swissprot
ID Q9LQ55
description Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
trembl
ID A0A067K1P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19524 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-like protein 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04444: 168528-177972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001147_110 0.0 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
2 Hb_000162_030 0.0545624809 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
3 Hb_008253_030 0.0565024109 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
4 Hb_002276_240 0.0571270997 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
5 Hb_001767_140 0.0605042247 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_184798_080 0.0622469184 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
7 Hb_002325_040 0.0657678593 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
8 Hb_008062_050 0.0666290534 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
9 Hb_004129_070 0.0696434973 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
10 Hb_000418_140 0.0699795653 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
11 Hb_003633_070 0.0709437665 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
12 Hb_000162_280 0.0720288238 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
13 Hb_000046_070 0.0721956985 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_000780_170 0.0723051218 - - PREDICTED: OBERON-like protein [Jatropha curcas]
15 Hb_001268_280 0.0755508349 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002267_140 0.0756923571 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_004357_020 0.0777584023 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
18 Hb_008103_020 0.0785231417 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
19 Hb_009112_010 0.0792255222 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_007508_080 0.0797317002 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]

Gene co-expression network

sample Hb_001147_110 Hb_001147_110 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_002276_240 Hb_002276_240 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_000162_030--Hb_002276_240 Hb_008253_030--Hb_001767_140 Hb_002253_080 Hb_002253_080 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_008253_030--Hb_002276_240 Hb_004129_070 Hb_004129_070 Hb_002276_240--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002276_240--Hb_002267_140 Hb_002276_240--Hb_001767_140 Hb_001767_140--Hb_002253_080 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_184798_080--Hb_009083_070 Hb_184798_080--Hb_002325_040 Hb_184798_080--Hb_004129_070 Hb_184798_080--Hb_002276_240 Hb_001135_120 Hb_001135_120 Hb_184798_080--Hb_001135_120 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_002325_040--Hb_140049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4742 24.5525 17.0467 15.6299 14.18 19.6955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.095 7.3697 11.4136 14.9828 11.511

CAGE analysis