Hb_004357_020

Information

Type -
Description -
Location Contig4357: 8919-12005
Sequence    

Annotation

kegg
ID rcu:RCOM_1186170
description protein dimerization, putative
nr
ID XP_012076190.1
description PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SN75
description Protein dimerization, putative OS=Ricinus communis GN=RCOM_1186170 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105637355

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004357_020 0.0 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
2 Hb_001728_050 0.0567840585 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
3 Hb_000162_030 0.0642532643 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
4 Hb_003633_070 0.0706766066 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
5 Hb_001247_130 0.0709214629 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
6 Hb_000070_080 0.0739372124 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
7 Hb_000162_280 0.0758112847 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
8 Hb_001635_040 0.0761264 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_001147_110 0.0777584023 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
10 Hb_032264_060 0.0777922695 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
11 Hb_001751_140 0.0792465596 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
12 Hb_111198_010 0.0798362384 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
13 Hb_001767_140 0.0803928897 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
14 Hb_006615_120 0.0808851652 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
15 Hb_014361_150 0.0811297472 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
16 Hb_002276_240 0.0814177244 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
17 Hb_002078_110 0.0816464768 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_184798_080 0.0818816879 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
19 Hb_002267_140 0.0822408854 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
20 Hb_002025_060 0.0824694983 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004357_020 Hb_004357_020 Hb_001728_050 Hb_001728_050 Hb_004357_020--Hb_001728_050 Hb_000162_030 Hb_000162_030 Hb_004357_020--Hb_000162_030 Hb_003633_070 Hb_003633_070 Hb_004357_020--Hb_003633_070 Hb_001247_130 Hb_001247_130 Hb_004357_020--Hb_001247_130 Hb_000070_080 Hb_000070_080 Hb_004357_020--Hb_000070_080 Hb_000162_280 Hb_000162_280 Hb_004357_020--Hb_000162_280 Hb_000803_070 Hb_000803_070 Hb_001728_050--Hb_000803_070 Hb_001751_140 Hb_001751_140 Hb_001728_050--Hb_001751_140 Hb_001728_050--Hb_001247_130 Hb_003927_040 Hb_003927_040 Hb_001728_050--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_001728_050--Hb_032264_060 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_002276_240 Hb_002276_240 Hb_000162_030--Hb_002276_240 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_032208_040 Hb_032208_040 Hb_001247_130--Hb_032208_040 Hb_005137_050 Hb_005137_050 Hb_001247_130--Hb_005137_050 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_000130_240 Hb_000130_240 Hb_001247_130--Hb_000130_240 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220 Hb_000162_280--Hb_009112_010 Hb_006615_120 Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.35104 6.8393 6.00934 3.5361 4.64708 5.82485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70238 2.99777 4.56304 3.62589 2.54276

CAGE analysis