Hb_000116_060

Information

Type -
Description -
Location Contig116: 61461-68302
Sequence    

Annotation

kegg
ID rcu:RCOM_0873810
description plant ubiquilin, putative
nr
ID XP_002521706.1
description plant ubiquilin, putative [Ricinus communis]
swissprot
ID Q9SII8
description Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1
trembl
ID B9S6T7
description Plant ubiquilin, putative OS=Ricinus communis GN=RCOM_0873810 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin domain-containing protein dsk2b-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04812: 61433-68203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_060 0.0 - - plant ubiquilin, putative [Ricinus communis]
2 Hb_001243_060 0.0564725153 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
3 Hb_003680_230 0.0593543485 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
4 Hb_000162_280 0.0604506942 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
5 Hb_001377_070 0.0673653013 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009112_010 0.0709277726 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_003040_020 0.0714805367 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_111198_010 0.0754294324 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_154114_010 0.0761001572 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
10 Hb_003633_070 0.0762273577 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
11 Hb_000331_330 0.076540019 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
12 Hb_005489_080 0.0789848447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000230_430 0.0793097395 - - catalytic, putative [Ricinus communis]
14 Hb_000152_340 0.0795442047 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
15 Hb_005188_060 0.0801078314 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_008112_030 0.0810117111 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002078_110 0.0816398136 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_006615_120 0.0820452436 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
19 Hb_000291_060 0.082223629 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
20 Hb_000960_050 0.0824209577 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]

Gene co-expression network

sample Hb_000116_060 Hb_000116_060 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_009780_100 Hb_009780_100 Hb_001243_060--Hb_009780_100 Hb_000230_430 Hb_000230_430 Hb_001243_060--Hb_000230_430 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_000162_280--Hb_009112_010 Hb_006615_120 Hb_006615_120 Hb_000162_280--Hb_006615_120 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_003633_070 Hb_003633_070 Hb_000162_280--Hb_003633_070 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_001347_040 Hb_001347_040 Hb_001377_070--Hb_001347_040 Hb_008159_020 Hb_008159_020 Hb_001377_070--Hb_008159_020 Hb_111198_010 Hb_111198_010 Hb_001377_070--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_001377_070--Hb_000732_120 Hb_008511_030 Hb_008511_030 Hb_001377_070--Hb_008511_030 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_009112_010--Hb_006615_120 Hb_004429_160 Hb_004429_160 Hb_003040_020--Hb_004429_160 Hb_000032_010 Hb_000032_010 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_000191_130 Hb_000191_130 Hb_003040_020--Hb_000191_130 Hb_019153_020 Hb_019153_020 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.3478 130.674 79.4486 66.4696 136.668 120.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.8876 47.8719 56.3654 56.5524 37.2294

CAGE analysis