Hb_002942_050

Information

Type -
Description -
Location Contig2942: 42350-44171
Sequence    

Annotation

kegg
ID rcu:RCOM_1503530
description translation factor sui1, putative
nr
ID XP_012090580.1
description PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
swissprot
ID Q9FH50
description APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1
trembl
ID A0A067JRB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26366 PE=4 SV=1
Gene Ontology
ID GO:0003723
description apo protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30773: 44994-55107 , PASA_asmbl_30774: 44994-55107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_050 0.0 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
2 Hb_011310_130 0.0588781864 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
3 Hb_000777_050 0.0644449003 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
4 Hb_003680_230 0.0675921672 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
5 Hb_011310_210 0.0693103591 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
6 Hb_003549_090 0.0704631443 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
7 Hb_001143_180 0.0708750207 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
8 Hb_008556_030 0.0717137392 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
9 Hb_011609_170 0.0740645982 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
10 Hb_001163_120 0.0770716952 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000785_030 0.0779743568 - - hypothetical protein RCOM_0808030 [Ricinus communis]
12 Hb_010193_050 0.0800534715 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007558_120 0.0806081034 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
14 Hb_000648_100 0.081662798 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
15 Hb_000270_460 0.0818583731 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
16 Hb_003126_100 0.0821366437 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
17 Hb_000368_020 0.082639516 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
18 Hb_000959_270 0.0839279701 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
19 Hb_018790_070 0.0842411085 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
20 Hb_001102_080 0.0844605513 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_050 Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_011310_130--Hb_003549_090 Hb_001635_040 Hb_001635_040 Hb_011310_130--Hb_001635_040 Hb_011310_130--Hb_000777_050 Hb_001163_120 Hb_001163_120 Hb_011310_130--Hb_001163_120 Hb_011310_130--Hb_011310_210 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_000777_050--Hb_011310_210 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_000777_050--Hb_001635_040 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_011310_210--Hb_003549_090 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99453 5.46158 6.68412 4.45563 7.97924 9.62465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76608 3.88888 3.57311 3.7303 2.96027

CAGE analysis