Hb_000309_040

Information

Type -
Description -
Location Contig309: 49306-57894
Sequence    

Annotation

kegg
ID rcu:RCOM_0850620
description protein farnesyltransferase beta subunit, putative (EC:2.5.1.58)
nr
ID XP_012081729.1
description PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
swissprot
ID Q04903
description Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=1 SV=1
trembl
ID A0A067LA75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09610 PE=4 SV=1
Gene Ontology
ID GO:0005965
description protein farnesyltransferase subunit beta isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32613: 51534-51786 , PASA_asmbl_32614: 49378-58011 , PASA_asmbl_32615: 49914-50203 , PASA_asmbl_32616: 56082-57735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_040 0.0 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
2 Hb_002078_110 0.0587348875 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
3 Hb_001051_080 0.06301939 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
4 Hb_000076_160 0.0671443731 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_001751_140 0.0703568 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
6 Hb_138596_010 0.070504925 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
7 Hb_002835_230 0.0707705597 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_000070_080 0.0716111988 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
9 Hb_004631_180 0.0726470083 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_014361_070 0.0731322612 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
11 Hb_001946_040 0.0736948401 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011310_210 0.0740375643 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
13 Hb_001635_040 0.074280835 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
14 Hb_000101_380 0.074770634 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
15 Hb_002311_070 0.0753082164 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
16 Hb_000679_310 0.0755965478 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
17 Hb_000484_030 0.0761093214 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
18 Hb_010381_090 0.07639426 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
19 Hb_000479_220 0.0765439623 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
20 Hb_001077_030 0.077220615 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000309_040 Hb_000309_040 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_001051_080 Hb_001051_080 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_000076_160--Hb_001751_140 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002835_230--Hb_131646_010 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4083 23.0653 19.665 23.3995 25.5626 23.4251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5378 17.1155 16.2097 13.7327 12.5387

CAGE analysis