Hb_000358_230

Information

Type -
Description -
Location Contig358: 259620-263489
Sequence    

Annotation

kegg
ID rcu:RCOM_1050340
description protein phosphatases pp1 regulatory subunit, putative
nr
ID XP_002514241.1
description protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
swissprot
ID Q54Q39
description Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1
trembl
ID B9RKJ7
description Protein phosphatases pp1 regulatory subunit, putative OS=Ricinus communis GN=RCOM_1050340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36909: 259591-263416 , PASA_asmbl_36910: 260152-262066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_230 0.0 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
2 Hb_000087_060 0.0577885045 - - protein transporter, putative [Ricinus communis]
3 Hb_000076_160 0.0595278364 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
4 Hb_003096_060 0.0627926885 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
5 Hb_001205_200 0.0670575165 - - conserved hypothetical protein [Ricinus communis]
6 Hb_154580_010 0.0680318036 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
7 Hb_000928_220 0.0694561968 - - PREDICTED: protein SCAI [Jatropha curcas]
8 Hb_001135_120 0.0759904916 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
9 Hb_000359_040 0.0775869341 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004096_180 0.0797599281 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
11 Hb_002876_130 0.0801691171 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
12 Hb_000120_170 0.080428184 - - selenoprotein [Populus trichocarpa]
13 Hb_005306_160 0.0811916595 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
14 Hb_004586_060 0.0814706205 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
15 Hb_002909_040 0.081806833 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
16 Hb_002272_050 0.0821376545 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
17 Hb_000513_090 0.0822790049 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
18 Hb_001720_040 0.0838661685 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001804_110 0.0842997555 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
20 Hb_003927_040 0.084723071 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000358_230 Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000358_230--Hb_000087_060 Hb_000076_160 Hb_000076_160 Hb_000358_230--Hb_000076_160 Hb_003096_060 Hb_003096_060 Hb_000358_230--Hb_003096_060 Hb_001205_200 Hb_001205_200 Hb_000358_230--Hb_001205_200 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000928_220 Hb_000928_220 Hb_000358_230--Hb_000928_220 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_008568_020 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.88734 16.1853 16.3992 13.7057 13.4458 10.4199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63831 11.5535 6.09723 10.7547 6.53937

CAGE analysis