Hb_001205_200

Information

Type -
Description -
Location Contig1205: 135286-141088
Sequence    

Annotation

kegg
ID rcu:RCOM_0536180
description hypothetical protein
nr
ID XP_002521581.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID B9S6G2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0536180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06346: 135701-135909 , PASA_asmbl_06347: 139766-142173 , PASA_asmbl_06348: 141647-142005
cDNA
(Sanger)
(ID:Location)		 016_P04.ab1: 140449-142173 , 027_B02.ab1: 140503-142173 , 029_B05.ab1: 140579-142173 , 039_E13.ab1: 140415-142173 , 040_F17.ab1: 140426-142173 , 040_N04.ab1: 140367-142173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000087_060 0.0462428677 - - protein transporter, putative [Ricinus communis]
3 Hb_004143_100 0.0592339603 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000076_160 0.0629857415 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_000402_230 0.0630025751 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
6 Hb_000358_230 0.0670575165 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
7 Hb_003866_080 0.0683707439 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
8 Hb_000940_200 0.068395779 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
9 Hb_000069_130 0.0702401942 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
10 Hb_001089_050 0.0702673434 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
11 Hb_000679_310 0.0726014645 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
12 Hb_002492_010 0.0739625387 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
13 Hb_002325_040 0.0759472475 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
14 Hb_002876_130 0.0760947961 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
15 Hb_028962_020 0.0777512655 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
16 Hb_005306_160 0.0792133252 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
17 Hb_184798_080 0.0793663817 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
18 Hb_000862_040 0.0796955961 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_000886_050 0.0798933341 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
20 Hb_008253_020 0.0802825845 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_001205_200 Hb_001205_200 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_000076_160 Hb_000076_160 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000087_060--Hb_000358_230 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_004143_100--Hb_000402_230 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_004143_100--Hb_002492_010 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000076_160--Hb_000358_230 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_003096_060 Hb_003096_060 Hb_000358_230--Hb_003096_060 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000358_230--Hb_000928_220 Hb_003866_080--Hb_001089_050 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_003866_080--Hb_002492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83925 11.269 6.86873 8.29723 6.1956 6.5802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88952 6.3104 4.19134 6.58803 3.71362

CAGE analysis