Hb_000009_500

Information

Type -
Description -
Location Contig9: 491662-496455
Sequence    

Annotation

kegg
ID rcu:RCOM_0603710
description hypothetical protein
nr
ID XP_012079127.1
description PREDICTED: NASP-related protein sim3 [Jatropha curcas]
swissprot
ID Q9USQ4
description NASP-related protein sim3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sim3 PE=1 SV=1
trembl
ID A0A067K6V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12298 PE=4 SV=1
Gene Ontology
ID GO:0006306
description protein hgv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61906: 491580-496472 , PASA_asmbl_61907: 495070-495281 , PASA_asmbl_61908: 496642-497699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_500 0.0 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
2 Hb_011849_040 0.034974383 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000402_230 0.0497625009 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
4 Hb_079326_020 0.0542446012 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002026_210 0.058122553 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_004109_230 0.0592556462 - - heat shock protein binding protein, putative [Ricinus communis]
7 Hb_000614_210 0.0641680071 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
8 Hb_008253_020 0.065436073 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
9 Hb_003120_080 0.0655532145 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
10 Hb_004143_100 0.0681467162 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001716_020 0.0700744666 - - hydrolase, putative [Ricinus communis]
12 Hb_020831_030 0.0701215156 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001089_050 0.0718292812 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
14 Hb_159558_010 0.0732746659 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
15 Hb_031042_050 0.0742542485 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
16 Hb_003943_010 0.075086677 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_530 0.0751030399 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002205_250 0.0756353828 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_004129_070 0.0769165145 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
20 Hb_001674_030 0.0774845339 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_500 Hb_000009_500 Hb_011849_040 Hb_011849_040 Hb_000009_500--Hb_011849_040 Hb_000402_230 Hb_000402_230 Hb_000009_500--Hb_000402_230 Hb_079326_020 Hb_079326_020 Hb_000009_500--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000614_210 Hb_000614_210 Hb_000009_500--Hb_000614_210 Hb_011849_040--Hb_079326_020 Hb_011849_040--Hb_000402_230 Hb_011849_040--Hb_002026_210 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_011849_040--Hb_000614_210 Hb_000402_230--Hb_004143_100 Hb_001089_050 Hb_001089_050 Hb_000402_230--Hb_001089_050 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_001716_020 Hb_001716_020 Hb_079326_020--Hb_001716_020 Hb_079326_020--Hb_001089_050 Hb_002960_080 Hb_002960_080 Hb_079326_020--Hb_002960_080 Hb_079326_020--Hb_000402_230 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_000139_130 Hb_000139_130 Hb_004109_230--Hb_000139_130 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_004109_230--Hb_011849_040 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7173 25.5769 13.5725 22.2463 17.9838 19.9953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3493 11.5352 13.5392 15.8317 14.5302

CAGE analysis