Hb_001814_030

Information

Type -
Description -
Location Contig1814: 32545-40538
Sequence    

Annotation

kegg
ID rcu:RCOM_1618440
description hypothetical protein
nr
ID XP_012092941.1
description PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
swissprot
ID Q80YV2
description Nuclear-interacting partner of ALK OS=Mus musculus GN=Zc3hc1 PE=1 SV=1
trembl
ID A0A067JKQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05838 PE=4 SV=1
Gene Ontology
ID GO:0005634
description c3hc zinc finger- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17640: 32679-40505
cDNA
(Sanger)
(ID:Location)		 031_J10.ab1: 32679-34840

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001814_030 0.0 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
2 Hb_004586_220 0.0447491036 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
3 Hb_002205_250 0.0491245134 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
4 Hb_000614_210 0.050051169 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
5 Hb_012395_140 0.0524139115 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
6 Hb_159558_010 0.0526037068 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
7 Hb_020378_030 0.0532155375 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_009270_020 0.0541996782 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
9 Hb_009976_020 0.0549219171 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
10 Hb_004182_050 0.0561587105 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
11 Hb_000227_220 0.0564960999 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
12 Hb_003734_010 0.0566257913 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
13 Hb_003411_040 0.0569680972 - - unnamed protein product [Coffea canephora]
14 Hb_001550_060 0.0602570536 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
15 Hb_000890_060 0.0602705978 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
16 Hb_011231_020 0.0609781316 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
17 Hb_000592_030 0.0612608587 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
18 Hb_001655_030 0.0616059134 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
19 Hb_007747_040 0.0616640821 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_000340_530 0.0617447988 - - hypothetical protein VITISV_016664 [Vitis vinifera]

Gene co-expression network

sample Hb_001814_030 Hb_001814_030 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_004586_220--Hb_020378_030 Hb_000537_050 Hb_000537_050 Hb_004586_220--Hb_000537_050 Hb_000170_090 Hb_000170_090 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_000441_220 Hb_000441_220 Hb_004586_220--Hb_000441_220 Hb_105105_010 Hb_105105_010 Hb_002205_250--Hb_105105_010 Hb_003835_070 Hb_003835_070 Hb_002205_250--Hb_003835_070 Hb_002205_250--Hb_000614_210 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_000614_210--Hb_159558_010 Hb_000614_210--Hb_003835_070 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_000614_210--Hb_105105_010 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_020378_030--Hb_000441_220 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9008 9.6639 7.12752 8.15985 9.2518 9.88403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00477 6.31686 7.221 10.6089 9.45694

CAGE analysis