Hb_002732_040

Information

Type -
Description -
Location Contig2732: 51062-58876
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03130g
description POPTRDRAFT_723369; hypothetical protein
nr
ID XP_012064911.1
description PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
swissprot
ID O95628
description CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3
trembl
ID A0A067LHQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05602 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28528: 51119-58829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002732_040 0.0 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
2 Hb_000343_250 0.0415607474 - - PREDICTED: protein CASC3 [Jatropha curcas]
3 Hb_007747_040 0.052805163 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
4 Hb_000462_060 0.0533741153 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
5 Hb_020378_030 0.0547598984 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
6 Hb_000866_460 0.0559744956 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
7 Hb_000327_270 0.0561245368 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
8 Hb_002205_250 0.0573498556 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_000037_190 0.0617300019 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
10 Hb_000200_380 0.0622878926 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
11 Hb_003504_030 0.0627641447 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
12 Hb_001268_280 0.0642103171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001814_030 0.066180541 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
14 Hb_000590_050 0.0662058029 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
15 Hb_000329_370 0.067516604 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
16 Hb_012395_140 0.0676082837 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
17 Hb_001004_060 0.0683014961 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
18 Hb_002218_090 0.0683298054 - - Poly(rC)-binding protein, putative [Ricinus communis]
19 Hb_000346_060 0.0687451314 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
20 Hb_000243_210 0.0691135808 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002732_040 Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_002205_250 Hb_002205_250 Hb_007747_040--Hb_002205_250 Hb_007747_040--Hb_020378_030 Hb_001814_030 Hb_001814_030 Hb_007747_040--Hb_001814_030 Hb_001268_280 Hb_001268_280 Hb_007747_040--Hb_001268_280 Hb_001946_340 Hb_001946_340 Hb_007747_040--Hb_001946_340 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_004586_220 Hb_004586_220 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_020378_030--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_001322_130 Hb_001322_130 Hb_000866_460--Hb_001322_130 Hb_000866_460--Hb_002205_250 Hb_000243_210 Hb_000243_210 Hb_000866_460--Hb_000243_210 Hb_002253_080 Hb_002253_080 Hb_000866_460--Hb_002253_080 Hb_001279_120 Hb_001279_120 Hb_000866_460--Hb_001279_120 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.293 20.7899 16.7588 16.2846 19.0138 21.4985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3597 11.3614 16.8542 15.3141 21.3603

CAGE analysis