Hb_002272_130

Information

Type -
Description -
Location Contig2272: 58220-61000
Sequence    

Annotation

kegg
ID rcu:RCOM_1430840
description excision repair cross-complementing 1 ercc1, putative
nr
ID XP_012089100.1
description PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
swissprot
ID Q9MA98
description DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1
trembl
ID B9RF25
description Excision repair cross-complementing 1 ercc1, putative OS=Ricinus communis GN=RCOM_1430840 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna excision repair protein ercc-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23677: 58223-60993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_130 0.0 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
2 Hb_000462_060 0.0546644661 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
3 Hb_033642_030 0.0572379605 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
4 Hb_000035_110 0.0682448687 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
5 Hb_000200_380 0.0682498788 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
6 Hb_002398_030 0.0684736808 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_032986_010 0.0688823425 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
8 Hb_003861_050 0.0691206146 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
9 Hb_001005_030 0.0692350431 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
10 Hb_000789_310 0.0702005618 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
11 Hb_002684_040 0.071260822 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_002073_190 0.0714617349 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
13 Hb_000317_470 0.0733785935 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
14 Hb_001047_220 0.0736015312 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
15 Hb_004109_280 0.0739724084 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
16 Hb_000617_180 0.0744551428 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_000345_380 0.0748784585 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_012053_080 0.0761751723 - - AP-2 complex subunit alpha, putative [Ricinus communis]
19 Hb_002997_080 0.0764883058 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
20 Hb_000343_250 0.0775102074 - - PREDICTED: protein CASC3 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_130 Hb_002272_130 Hb_000462_060 Hb_000462_060 Hb_002272_130--Hb_000462_060 Hb_033642_030 Hb_033642_030 Hb_002272_130--Hb_033642_030 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_000200_380 Hb_000200_380 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_032986_010 Hb_032986_010 Hb_002272_130--Hb_032986_010 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_033642_030--Hb_000789_310 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_001377_310 Hb_001377_310 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_000200_380--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_000200_380--Hb_004097_070 Hb_000200_380--Hb_002732_040 Hb_019280_030 Hb_019280_030 Hb_000200_380--Hb_019280_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_002398_030--Hb_000035_110 Hb_002398_030--Hb_001635_160 Hb_002997_080 Hb_002997_080 Hb_032986_010--Hb_002997_080 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_000883_020 Hb_000883_020 Hb_032986_010--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_032986_010--Hb_009545_080 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23157 6.68542 10.4574 8.23755 10.9015 12.416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88697 5.91421 6.97878 7.47174 8.22277

CAGE analysis