Hb_000617_180

Information

Type -
Description -
Location Contig617: 113820-119380
Sequence    

Annotation

kegg
ID cmo:103492148
description 26S protease regulatory subunit 6A homolog
nr
ID KJB81027.1
description hypothetical protein B456_013G125900 [Gossypium raimondii]
swissprot
ID Q9SEI2
description 26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=1 SV=1
trembl
ID A0A0D2SD35
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G125900 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit 6a homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51272: 113894-117978 , PASA_asmbl_51275: 108552-137057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_180 0.0 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
2 Hb_000462_060 0.0565573579 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
3 Hb_000347_070 0.0589255665 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002375_010 0.0592116834 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
5 Hb_004619_030 0.0594913335 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
6 Hb_168978_030 0.0595934659 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
7 Hb_000008_290 0.0604051976 - - PREDICTED: protein SAND [Jatropha curcas]
8 Hb_003025_110 0.060784536 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
9 Hb_004410_030 0.0617881524 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000613_050 0.0636221783 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
11 Hb_002784_020 0.064740132 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
12 Hb_000935_010 0.0652053781 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
13 Hb_000207_180 0.0653815432 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
14 Hb_003163_020 0.0660038205 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
15 Hb_007576_110 0.0661023569 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
16 Hb_000592_030 0.067009998 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
17 Hb_010174_040 0.0671935192 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
18 Hb_105328_020 0.0672960349 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
19 Hb_063716_100 0.0679273706 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
20 Hb_000390_320 0.0681574016 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]

Gene co-expression network

sample Hb_000617_180 Hb_000617_180 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_000347_070--Hb_004619_030 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_004619_030--Hb_003163_020 Hb_000011_200 Hb_000011_200 Hb_004619_030--Hb_000011_200 Hb_011930_160 Hb_011930_160 Hb_004619_030--Hb_011930_160 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_000640_170 Hb_000640_170 Hb_168978_030--Hb_000640_170 Hb_000035_470 Hb_000035_470 Hb_168978_030--Hb_000035_470 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3609 44.0111 51.1879 47.9514 64.8637 73.4729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.0342 44.2365 52.5855 71.922 50.5547

CAGE analysis