Hb_123903_010

Information

Type transcription factor
Description TF Family: IWS1
Location Contig123903: 8831-12952
Sequence    

Annotation

kegg
ID rcu:RCOM_1632970
description hypothetical protein
nr
ID XP_002517284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FHK9
description Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
trembl
ID B9RU65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1632970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable mediator of rna polymerase ii transcription subunit 26b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07242: 9596-11692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123903_010 0.0 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
2 Hb_143629_110 0.0582921418 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
3 Hb_009175_020 0.0602956524 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
4 Hb_002815_030 0.0620542616 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
5 Hb_000975_040 0.0630263116 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
6 Hb_000390_320 0.0632458211 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
7 Hb_032202_200 0.063984752 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000008_290 0.064978971 - - PREDICTED: protein SAND [Jatropha curcas]
9 Hb_012395_140 0.0654799934 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_025477_040 0.0664625701 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
11 Hb_000116_500 0.0670413962 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
12 Hb_003253_040 0.0683658142 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
13 Hb_000613_050 0.069802702 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
14 Hb_009545_100 0.0699368279 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
15 Hb_002329_040 0.0739589665 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
16 Hb_000958_140 0.0742975447 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
17 Hb_012022_090 0.0743435722 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
18 Hb_000617_180 0.0752031604 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
19 Hb_000347_070 0.0754588853 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000592_030 0.0762767401 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_123903_010 Hb_123903_010 Hb_143629_110 Hb_143629_110 Hb_123903_010--Hb_143629_110 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_002815_030 Hb_002815_030 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_000390_320 Hb_000390_320 Hb_123903_010--Hb_000390_320 Hb_032202_200 Hb_032202_200 Hb_123903_010--Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_000958_140 Hb_000958_140 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_001369_130 Hb_001369_130 Hb_000975_040--Hb_001369_130 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_002375_010 Hb_002375_010 Hb_000390_320--Hb_002375_010 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_000390_320--Hb_002329_040 Hb_032202_200--Hb_025477_040 Hb_003163_020 Hb_003163_020 Hb_032202_200--Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_032202_200--Hb_011930_160 Hb_010174_040 Hb_010174_040 Hb_032202_200--Hb_010174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09295 6.1267 4.05745 7.1002 9.30556 7.98474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94909 4.58241 6.88675 9.14822 6.31029

CAGE analysis