Hb_032202_200

Information

Type -
Description -
Location Contig32202: 108213-111788
Sequence    

Annotation

kegg
ID rcu:RCOM_1613760
description ubiquitin-protein ligase, putative
nr
ID XP_002511794.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID B9RDK5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1613760 PE=4 SV=1
Gene Ontology
ID GO:0016874
description vacuolar protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34092: 108221-111733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_200 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_143629_110 0.0571348934 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
3 Hb_025477_040 0.0607566328 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
4 Hb_123903_010 0.063984752 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
5 Hb_003163_020 0.0676438971 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
6 Hb_011930_160 0.0684381374 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
7 Hb_010174_040 0.0765560738 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
8 Hb_004619_030 0.0803502551 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
9 Hb_000617_180 0.0810026229 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
10 Hb_000390_320 0.0818315525 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_001369_130 0.0829932807 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
12 Hb_000617_100 0.085069542 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
13 Hb_001221_080 0.0851795992 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
14 Hb_116349_070 0.0852602255 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
15 Hb_002783_240 0.0857499712 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_000347_070 0.0868054644 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002815_030 0.0868773752 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
18 Hb_000120_060 0.0886102803 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
19 Hb_000333_060 0.0889470425 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_000983_150 0.0899871335 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_200 Hb_032202_200 Hb_143629_110 Hb_143629_110 Hb_032202_200--Hb_143629_110 Hb_025477_040 Hb_025477_040 Hb_032202_200--Hb_025477_040 Hb_123903_010 Hb_123903_010 Hb_032202_200--Hb_123903_010 Hb_003163_020 Hb_003163_020 Hb_032202_200--Hb_003163_020 Hb_011930_160 Hb_011930_160 Hb_032202_200--Hb_011930_160 Hb_010174_040 Hb_010174_040 Hb_032202_200--Hb_010174_040 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_002329_040 Hb_002329_040 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_123903_010--Hb_000390_320 Hb_003163_020--Hb_011930_160 Hb_004619_030 Hb_004619_030 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_000011_200 Hb_000011_200 Hb_003163_020--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_011930_160--Hb_001946_010 Hb_011930_160--Hb_004619_030 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_000193_190 Hb_000193_190 Hb_011930_160--Hb_000193_190 Hb_103012_010 Hb_103012_010 Hb_011930_160--Hb_103012_010 Hb_003645_060 Hb_003645_060 Hb_010174_040--Hb_003645_060 Hb_000592_030 Hb_000592_030 Hb_010174_040--Hb_000592_030 Hb_010174_040--Hb_000617_180 Hb_002909_140 Hb_002909_140 Hb_010174_040--Hb_002909_140 Hb_001655_030 Hb_001655_030 Hb_010174_040--Hb_001655_030 Hb_010174_040--Hb_143629_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88287 5.55902 6.05031 8.59066 11.586 8.58395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42206 3.98517 7.86094 10.8531 5.96032

CAGE analysis