Hb_000347_070

Information

Type -
Description -
Location Contig347: 84536-87493
Sequence    

Annotation

kegg
ID rcu:RCOM_0684710
description hypothetical protein
nr
ID XP_002529184.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O60066
description Alpha-ketoglutarate-dependent dioxygenase abh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abh1 PE=2 SV=3
trembl
ID B9ST65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0684710 PE=4 SV=1
Gene Ontology
ID GO:0051213
description alpha-ketoglutarate-dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36179: 84586-87298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002025_020 0.0495944333 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
3 Hb_000731_270 0.0498114494 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
4 Hb_004619_030 0.0547319132 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
5 Hb_002375_010 0.0555551501 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
6 Hb_003163_020 0.0560135408 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
7 Hb_000190_120 0.0580421094 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
8 Hb_003158_010 0.0581616777 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
9 Hb_000617_180 0.0589255665 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
10 Hb_009545_100 0.0594194302 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
11 Hb_000207_180 0.0605592088 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
12 Hb_007576_110 0.0607938586 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_000193_190 0.0639467765 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
14 Hb_006420_040 0.0645600031 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
15 Hb_017862_020 0.0660594411 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
16 Hb_003025_110 0.0663687082 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_000462_060 0.066772691 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
18 Hb_000975_040 0.0672476877 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
19 Hb_000225_040 0.0677633109 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
20 Hb_002518_280 0.0693457138 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_000347_070 Hb_000347_070 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230 Hb_007645_100 Hb_007645_100 Hb_000731_270--Hb_007645_100 Hb_000207_180 Hb_000207_180 Hb_000731_270--Hb_000207_180 Hb_006420_040 Hb_006420_040 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000441_120 Hb_000441_120 Hb_000731_270--Hb_000441_120 Hb_004619_030--Hb_003163_020 Hb_000011_200 Hb_000011_200 Hb_004619_030--Hb_000011_200 Hb_011930_160 Hb_011930_160 Hb_004619_030--Hb_011930_160 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_000617_180 Hb_000617_180 Hb_004619_030--Hb_000617_180 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_003163_020--Hb_011930_160 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_003163_020--Hb_000011_200 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6738 11.1059 9.11957 8.62018 17.9304 13.8419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7328 9.88052 12.4607 14.0377 10.807

CAGE analysis