Hb_001369_130

Information

Type -
Description -
Location Contig1369: 113847-120261
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10620g
description POPTRDRAFT_817262; hypothetical protein
nr
ID XP_012090470.1
description PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q0WWQ1
description Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=1 SV=2
trembl
ID A0A067JF29
description Autophagy-related protein 3 OS=Jatropha curcas GN=JCGZ_26278 PE=3 SV=1
Gene Ontology
ID GO:0005829
description autophagy-related protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10142: 113814-120225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_130 0.0 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
2 Hb_000975_040 0.055617454 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
3 Hb_012395_140 0.0584885233 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
4 Hb_000958_140 0.0614583466 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
5 Hb_000462_060 0.0698572888 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
6 Hb_000789_250 0.0701274499 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
7 Hb_004267_040 0.0712097219 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
8 Hb_000011_100 0.0712907715 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
9 Hb_000390_320 0.073655435 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
10 Hb_034432_030 0.0741831486 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
11 Hb_001379_110 0.0742803529 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
12 Hb_000671_070 0.0751538806 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
13 Hb_007635_030 0.07600942 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
14 Hb_014361_070 0.0761849271 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_116349_070 0.0768520854 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
16 Hb_001047_220 0.0770875524 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
17 Hb_004129_070 0.0773322381 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
18 Hb_001550_060 0.0778826131 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
19 Hb_002375_010 0.0778932657 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
20 Hb_027380_140 0.0786118231 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_130 Hb_001369_130 Hb_000975_040 Hb_000975_040 Hb_001369_130--Hb_000975_040 Hb_012395_140 Hb_012395_140 Hb_001369_130--Hb_012395_140 Hb_000958_140 Hb_000958_140 Hb_001369_130--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001369_130--Hb_000462_060 Hb_000789_250 Hb_000789_250 Hb_001369_130--Hb_000789_250 Hb_004267_040 Hb_004267_040 Hb_001369_130--Hb_004267_040 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_001047_220 Hb_001047_220 Hb_000958_140--Hb_001047_220 Hb_138596_010 Hb_138596_010 Hb_000958_140--Hb_138596_010 Hb_001409_020 Hb_001409_020 Hb_000958_140--Hb_001409_020 Hb_001379_110 Hb_001379_110 Hb_000958_140--Hb_001379_110 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_000462_060--Hb_001047_220 Hb_000313_120 Hb_000313_120 Hb_000789_250--Hb_000313_120 Hb_020378_030 Hb_020378_030 Hb_000789_250--Hb_020378_030 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1183 38.3324 30.12 31.8905 46.3172 31.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5956 17.2351 28.4326 35.8112 28.1408

CAGE analysis